YRC Public Data Repository - Protein Structure Prediction

Protein:	psf1 (reserved)
Organism:	Schizosaccharomyces pombe
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psf1 (reserved).

Description	E-value	Query Range	Subject Range
PSF1_CHAGB - DNA replication complex GINS protein PSF1 OS=Chaetomium globosum GN=PSF1 PE=3 SV=1 PSF1_CHAGB - DNA replication complex GINS protein PSF1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DS...	282.0	[0..6]	[202..5]
PSF1_NEUCR - DNA replication complex GINS protein psf1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS... PSF1_NEUCR - DNA replication complex GINS protein psf-1 OS=Neurospora crassa GN=psf-1 PE=3 SV=1	277.0	[0..6]	[202..5]
PSF1_GIBZE - DNA replication complex GINS protein PSF1 OS=Gibberella zeae GN=PSF1 PE=3 SV=1 PSF1_GIBZE - DNA replication complex GINS protein PSF1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 907...	273.0	[0..6]	[202..3]
gi\|109093199 - gi\|109093199\|ref\|XP_001107106.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Ma...	273.0	[0..7]	[202..68]
gi\|40788899 - gi\|40788899\|dbj\|BAA11503.2\| KIAA0186 [Homo sapiens]	270.0	[0..7]	[202..34]
gi\|39944904, gi\|... - gi\|39944904\|ref\|XP_361989.1\| hypothetical protein MG04434.4 [Magnaporthe grisea 70-15], gb\|EAA50675....	267.0	[0..6]	[202..3]
PSF1_MOUSE - DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=1 SV=1	267.0	[0..7]	[202..4]
GINS1 - GINS complex subunit 1 (Psf1 homolog) gi\|168274446 - gi\|168274446\|dbj\|BAG09643.1\| DNA replication complex GINS protein PSF1 [synthetic construct] gi\|114681346 - gi\|114681346\|ref\|XP_514558.2\| PREDICTED: similar to KIAA0186 isoform 2 [Pan troglodytes]	266.0	[0..7]	[202..4]
gi\|109471018, gi... - gi\|62646037\|ref\|XP_575258.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Rattus...	266.0	[0..7]	[202..4]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGLGNRSN KLIRDSKRTQ YLDYLPPYQA DTVNDVVNEI RAADRESLGI LQNVTHEASQ  60
   61 PFQPQDHPSE AAALLMFHSS SIYNKRCLMA YHNLRLQRLR QYCWSGGKRM ESCLDTSLST 120
  121 YERDYLTRYS ELLAAYKGAW SELDLTGSLV PPKNLFIDVR VLKDVGDIET EYGTINLTKN 180
  181 SQLHVRATDV ERLIAQGFLA KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.522879
Match:	2q9qC
Description:	No description for 2q9qC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits