YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC8C9.10c
Organism:	Schizosaccharomyces pombe
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC8C9.10c.

Description	E-value	Query Range	Subject Range
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAP68958.1	135.0	[0..32]	[151..1543]
gi\|116203679, gi... - gi\|88175851\|gb\|EAQ83319.1\| hypothetical protein CHGG_09723 [Chaetomium globosum CBS 148.51], gi\|1162...	110.0	[0..5]	[133..793]
gi\|39586313, gi\|... - gi\|39586313\|emb\|CAE66724.1\| Hypothetical protein CBG12070 [Caenorhabditis briggsae], gi\|187029900\|em...	105.0	[0..31]	[150..1641]
gi\|46123935, gi\|... - gi\|46123935\|ref\|XP_386521.1\| hypothetical protein FG06345.1 [Gibberella zeae PH-1], gi\|42552119\|gb\|E...	105.0	[0..2]	[135..10]
gi\|85092801 - gi\|85092801\|ref\|XP_959552.1\| hypothetical protein NCU06090 [Neurospora crassa OR74A] gi\|32410929, gi\|... - gi\|32410929\|ref\|XP_325945.1\| hypothetical protein [Neurospora crassa], gi\|28920992\|gb\|EAA30316.1\| pr...	98.0	[0..2]	[119..4]
gi\|90303340, gi\|... - gi\|90303340\|gb\|EAS32971.1\| hypothetical protein CIMG_03995 [Coccidioides immitis RS], gi\|119187895\|r...	97.0	[0..3]	[115..131]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEERINA WNDGFEELLS YIPAKLYYRE HTANQWKQKK STLEEKKERR KMKFSLDGLV  60
   61 NDADDDSQKS SKWEQSSTMS DDTDVSDRHA ESMSQIRGKL ASKIQDLREK RKAGDLNQKR 120
  121 QNKRPVENEK DSQKGSGKSK VQKKKHKASP RAGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits