YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC306.08c
Organism:	Schizosaccharomyces pombe
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC306.08c.

Description	E-value	Query Range	Subject Range
MDHM1_ARATH - Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1	329.0	[0..1]	[340..1]
gi\|67968888 - gi\|67968888\|dbj\|BAE00801.1\| unnamed protein product [Macaca fascicularis] gi\|109107092 - gi\|109107092\|ref\|XP_001084747.1\| PREDICTED: lactate dehydrogenase A isoform 6 [Macaca mulatta]	325.0	[0..7]	[339..28]
gi\|73988677 - gi\|73988677\|ref\|XP_534084.2\| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH musc...	325.0	[0..7]	[339..28]
gi\|17368677, gi\|... - gi\|17368677\|sp\|Q9BE24\|LDHA_MACFA L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M...	322.0	[0..9]	[339..1]
LDHA_PONAB - L-lactate dehydrogenase A chain OS=Pongo abelii GN=LDHA PE=2 SV=3 LDHA_PONPY - L-lactate dehydrogenase A chain - Pongo pygmaeus (Orangutan)	322.0	[0..9]	[339..1]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAKVAFKNF TPLKSIAPRS FSTTSSRAFK VAVLGAGGGI GQPLSMLLKL NDKVSELALF  60
   61 DIRGAPGVAA DIGHINTTSN VVGYAPDDKG LEKALNGADV VIIPAGVPRK PGMTRDDLFA 120
  121 TNASIVRDLA FAAGETCPEA KYLVVTNPVN STVPIFKKAL ERVGVHQPKH LFGVTTLDSV 180
  181 RASRFTSQVT NGKAELLHIP VVGGHSGATI VPLLSQGGVE LTGEKRDALI HRIQFGGDEV 240
  241 VKAKAGAGSA TLSMAYAGAR MASSVLRALA GESGVEECTF VESPLYKDQG IDFFASRVTL 300
  301 GKDGVDTIHP VGKINDYEES LLKVALGELK KSITKGEQFV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.522879
Match:	1sevA
Description:	Mature and translocatable forms of glyoxysomal malate dehydrogenase have different activities and stabilities but similar crystal structures
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits