YRC Public Data Repository - Protein Structure Prediction

Protein:	gyp1
Organism:	Schizosaccharomyces pombe
Length:	514 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gyp1.

Description	E-value	Query Range	Subject Range
gi\|76650138 - gi\|76650138\|ref\|XP_885771.1\| PREDICTED: similar to TBC1 domain family, member 22B isoform 4 [Bos tau...	319.0	[0..16]	[514..12]
TBC1D22B - TBC1 domain family, member 22B	317.0	[0..16]	[514..12]
gi\|114607235 - gi\|114607235\|ref\|XP_527375.2\| PREDICTED: TBC1 domain family, member 22B [Pan troglodytes]	317.0	[0..16]	[514..12]
gi\|149269125, gi... - gi\|94403597\|ref\|XP_998823.1\| PREDICTED: similar to TBC1 domain family, member 22B isoform 2 [Mus mus...	317.0	[0..16]	[514..12]
TB22B_MACFA - TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1	317.0	[0..16]	[514..12]
gi\|109509770 - gi\|109509770\|ref\|XP_001069956.1\| PREDICTED: similar to TBC1 domain family, member 22B isoform 1 [Rat...	317.0	[0..16]	[514..12]
gi\|50761292 - gi\|50761292\|ref\|XP_419261.1\| PREDICTED: similar to hypothetical protein [Gallus gallus]	316.0	[0..5]	[514..61]
gi\|73972761 - gi\|73972761\|ref\|XP_538894.2\| PREDICTED: similar to TBC1 domain family, member 22B [Canis familiaris]	315.0	[0..29]	[514..9]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQSKKSSA LKTLSSLWNG SSSATSDPVT VLDRSRTHHH RGRSTSSKAQ PFRLDDSVYS  60
   61 DQPPKDHISL ARSITRPESA SESKIYAPSA RSSLSLEAVV GKKVSAKFAK YLSQTDDDWG 120
  121 VSNIKASKSL PRMARSTTPN SSSRSLFPQN GVDTTTSRQK LHSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [166-514]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFPLPAKLAH RSVEVEVAES NALVSRIKKF SRILDAPIVD LNALRTLAWN GIPSEHRPIV  60
   61 WKYLLGYLPC NASRREVTLK RKRDEYNAAK DSCFNTNTEP PPLDQTIWRQ IVLDVPRTNP 120
  121 SILLYQNPLT QRMLERILYV WASRHPASGY VQGISDLVTP FIQVFLSEYI GDKDPMTYDI 180
  181 ALLDETNRND IEADAYWCLS KLLDGIQDNY IHAQPGIRRQ VNNLRELTLR IDEPLVKHLQ 240
  241 MEGVDFLQFS FRWMNCLLMR ELSISNIIRM WDTYMAEGVQ GFSEFHLYVC AAFLVKWSSE 300
  301 LQKMEFQDIL IFLQSIPTKD WSTKDIEILL SEAFLWKSLY SGAGAHLKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	2qfzA
Description:	No description for 2qfzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits