YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21H7.06c
Organism:	Schizosaccharomyces pombe
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21H7.06c.

Description	E-value	Query Range	Subject Range
C11orf73 - chromosome 11 open reading frame 73 gi\|123998603, gi... - gi\|123998603\|gb\|ABM86903.1\| chromosome 11 open reading frame 73 [synthetic construct], gi\|123984623\|... gi\|114639664, gi... - gi\|114639664\|ref\|XP_001175309.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114... gi\|109108177 - gi\|109108177\|ref\|XP_001102946.1\| PREDICTED: similar to CG13926-PA isoform 4 [Macaca mulatta]	236.0	[0..1]	[196..1]
HIKES_BOVIN - Protein Hikeshi OS=Bos taurus PE=2 SV=1	235.0	[0..1]	[196..1]
HIKES_MOUSE - Protein Hikeshi OS=Mus musculus GN=L7rn6 PE=1 SV=1 HIKES_RAT - Protein Hikeshi OS=Rattus norvegicus PE=2 SV=2 tr\|G3HXS2\|G3HXS2... - Uncharacterized protein C11orf73-like OS=Cricetulus griseus GN=I79_015835 PE=4 SV=1	235.0	[0..1]	[196..1]
gi\|57102310 - gi\|57102310\|ref\|XP_533984.1\| PREDICTED: similar to CG13926-PA isoform 1 [Canis familiaris]	234.0	[0..1]	[196..1]
gi\|67515835, gi\|... - gi\|67515835\|ref\|XP_657803.1\| hypothetical protein AN0199.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	229.0	[0..1]	[198..147]
HIKES_XENLA - Protein Hikeshi OS=Xenopus laevis PE=2 SV=1	219.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGAICAGRL VQTNLQQVAD NQFVFQLDSA ESLNHIVVFL LPNSPFPVGM GAKVYFQWPG  60
   61 KPFQFLGYLT NEKPSAIFRL KNTIQTLSEN ENCVGITAML GISVEPLTNF TETPAVSTSA 120
  121 SNVIAKPLPP VTSVAQKILT NLYNFLASFA TSQLPPNSIG LGDLRPNDTF IPLRVFQDWH 180
  181 AKFLNKLSNN PNFLDSEDQI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	155.19382
Match:	PF05603.3
Description:	No description for PF05603.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits