YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC887.12
Organism:	Schizosaccharomyces pombe
Length:	1258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC887.12.

Description	E-value	Query Range	Subject Range
gi\|40738897, gi\|... - gi\|67539884\|ref\|XP_663716.1\| hypothetical protein AN6112.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	876.0	[0..21]	[1257..93]
gi\|115443082, gi... - gi\|115443082\|ref\|XP_001218348.1\| hypothetical protein ATEG_09726 [Aspergillus terreus NIH2624], gi\|1...	861.0	[0..21]	[1257..95]
gi\|46124731, gi\|... - gi\|46124731\|ref\|XP_386919.1\| hypothetical protein FG06743.1 [Gibberella zeae PH-1], gi\|42553544\|gb\|E...	857.0	[0..29]	[1257..99]
gi\|90305823, gi\|... - gi\|90305823\|gb\|EAS35454.1\| hypothetical protein CIMG_00808 [Coccidioides immitis RS], gi\|119192862\|r...	855.0	[0..12]	[1257..109]
gi\|83775133 - gi\|83775133\|dbj\|BAE65256.1\| unnamed protein product [Aspergillus oryzae] gi\|169783854 - gi\|169783854\|ref\|XP_001826389.1\| hypothetical protein [Aspergillus oryzae RIB40]	854.0	[0..27]	[1257..101]
gi\|66852857, gi\|... - gi\|71001076\|ref\|XP_755219.1\| phospholipid-transporting ATPase [Aspergillus fumigatus Af293], gi\|6685...	847.0	[0..21]	[1257..94]
gi\|116207282, gi... - gi\|88183531\|gb\|EAQ90999.1\| hypothetical protein CHGG_02934 [Chaetomium globosum CBS 148.51], gi\|1162...	840.0	[0..55]	[1257..137]
gi\|49650647, gi\|... - gi\|50554739\|ref\|XP_504778.1\| YALI0E34551p [Yarrowia lipolytica], gi\|49650647\|emb\|CAG80385.1\| unnamed... gi\|49650647 - gi\|49650647\|emb\|CAG80385.1\| YALI0E34551p [Yarrowia lipolytica]	830.0	[0..4]	[1258..47]
gi\|28918918, gi\|... - gi\|32403650\|ref\|XP_322438.1\| hypothetical protein [Neurospora crassa], gi\|28918918\|gb\|EAA28587.1\| hy... gi\|85087076 - gi\|85087076\|ref\|XP_957823.1\| hypothetical protein NCU00352 [Neurospora crassa OR74A]	829.0	[0..33]	[1257..108]
gi\|9624461 - gi\|9624461\|gb\|AAF90186.1\|AF280421_1 putative calcium transporting ATPase [Ajellomyces capsulatus]	825.0	[0..41]	[1257..62]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDVDNKQN AKRISRDEDE DEFAGESMVG RTLDNPFLGE DEFEDIFGSE SQYISSSGQN  60
   61 STNPFLADTR IENSPLGSES KANQLNKQGT NVNHIEIPLR DFNDPTQPES FLPPPKNTFT 120
  121 SRIKKIKNLF K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-1258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEKKQVKPED LGPRQIILND YSANHFLHNA VSTCKYSAFT FLPKFLKEQF SKYANLFFLF  60
   61 TAVVQQIPGI TPVNRYTTIG PMLIVLSVSG IKEIMEDIKR KKQDQELNES PCYVLQGTGF 120
  121 VEKQWKDVVV GDIVKIVSET FFPADLVLLS SSEPEGLCYI ETANLDGETN LKIKQALPET 180
  181 AGLLKPVELG QLSGEVKSEQ PNNNLYTFDA TLKLLPSDRE LPLSPDQLLL RGAQLRNTPW 240
  241 VYGIVVFTGH ESKLMKNTTE TPIKRTSVEK QVNSQILFLL CIFVFLCFAS SLGALIHRSV 300
  301 YGSALSYVKY TSNRAGMFFK GLLTFWILYS NLVPISLFVT FELVRYIQAQ LISSDLDMYN 360
  361 EETDTPAACR TSSLVEELGQ VGYIFSDKTG TLTRNQMEFR QCTIAGVAYA DVIPEDRQFT 420
  421 SEDLDSDMYI YDFDTLKENL KHSENASLIH QFLLVLSICH TVIPEYDEST NSIKYQASSP 480
  481 DEGALVKGAA SIGYKFLARK PHLVTVSIFG KDESYELLHI CEFNSTRKRM SIVFRCPDGK 540
  541 IRLYVKGADT VIMERLASDN PYLQTTIHHL EDYATVGLRT LCIAMREVPE DEYQRWSTVF 600
  601 ETAASSLVDR AQKLMDAAEE IEKDLILLGA TAIEDRLQDG VPDTISTLQT AGIKIWVLTG 660
  661 DRQETAINIG MSCKLIDEDM GLVIVNEETK EATAESVMAK LSSIYRNEAT TGNVESMALV 720
  721 IDGVSLTYAL DFSLERRFFE LASLCRAVIC CRVSPLQKAL IVKMVKRNTG EVLLAIGDGA 780
  781 NDVPMIQAAH VGVGISGMEG LQAVRSSDFS ISQFCYLKKL LLVHGSWCYQ RLSKLILYSF 840
  841 YKNIALYMTQ FWYAFCNAFS GQVIFESWSI SLYNVLFTVL PPVVIGIFDQ FVSAGQLFQY 900
  901 PQLYQLGQRS EFFNLKRFWS WITNGFYHSL LLFLCSIAVF YYDGPNKDGL ASGHWVWGTT 960
  961 LYAAILATVL GKAALISNHW TQYTVIATLG SFLLWIVFMP IYAVAAPAIG FSKEYYGIIP1020
 1021 HLYGNLKFWA SLLVLPTIAL MRDFVWKYSS RMYYPEEYHY VQEIQKYNVT DYRPRIVGFH1080
 1081 KAIRKIRQMQ RMRKQRGYAF SQGEEDQSRI LDAYDTTHTR GAYGEMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	163.0
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits