YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC25B2.10
Organism:	Schizosaccharomyces pombe
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC25B2.10.

Description	E-value	Query Range	Subject Range
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	159.0	[0..18]	[307..31]
Y531_METJA - Uncharacterized protein MJ0531 OS=Methanocaldococcus jannaschii GN=MJ0531 PE=3 SV=1 Y531_METJA - Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	133.0	[0..133]	[282..20]
gi\|68212208, gi\|... - gi\|91774262\|ref\|YP_566954.1\| hypothetical protein Mbur_2350 [Methanococcoides burtonii DSM 6242], gi...	131.0	[0..134]	[282..1]
gi\|22299069, gi\|... - gi\|22299069\|ref\|NP_682316.1\| hypothetical protein tlr1526 [Thermosynechococcus elongatus BP-1], gi\|2...	130.0	[0..1]	[280..18]
gi\|73668367, gi\|... - gi\|73668367\|ref\|YP_304382.1\| universal stress protein [Methanosarcina barkeri str. Fusaro], gi\|72395...	130.0	[0..136]	[288..9]
gi\|55380234, gi\|... - gi\|55380234\|ref\|YP_138083.1\| universal stress protein 1 [Haloarcula marismortui ATCC 43049], gi\|5523...	130.0	[0..55]	[280..62]
gi\|228917268, gi... - gi\|228917268\|ref\|ZP_04080825.1\| Universal stress protein [Bacillus thuringiensis serovar pulsiensis ... gi\|228935935, gi... - gi\|228935935\|ref\|ZP_04098745.1\| Universal stress protein [Bacillus thuringiensis serovar andalousien... gi\|228929678, gi... - gi\|228929678\|ref\|ZP_04092696.1\| Universal stress protein [Bacillus thuringiensis serovar pondicherie... gi\|228771923, gi... - gi\|228987875\|ref\|ZP_04147984.1\| Universal stress protein [Bacillus thuringiensis serovar tochigiensi... gi\|228811341, gi... - gi\|228948354\|ref\|ZP_04110637.1\| Universal stress protein [Bacillus thuringiensis serovar monterrey B... gi\|229124195, gi... - gi\|229124195\|ref\|ZP_04253387.1\| Universal stress protein [Bacillus cereus 95/8201], gi\|228659497\|gb\|... gi\|229093721, gi... - gi\|229093721\|ref\|ZP_04224820.1\| Universal stress protein [Bacillus cereus Rock3-42], gi\|228689606\|gb... gi\|228625191, gi... - gi\|229158233\|ref\|ZP_04286300.1\| Universal stress protein [Bacillus cereus ATCC 4342], gi\|228625191\|g... gi\|229141353, gi... - gi\|229141353\|ref\|ZP_04269891.1\| Universal stress protein [Bacillus cereus BDRD-ST26], gi\|228642134\|g... gi\|229198783, gi... - gi\|229198783\|ref\|ZP_04325479.1\| Universal stress protein [Bacillus cereus m1293], gi\|228584716\|gb\|EE... gi\|229186885, gi... - gi\|229186885\|ref\|ZP_04314040.1\| Universal stress protein [Bacillus cereus BGSC 6E1], gi\|228596622\|gb... gi\|65321995 - gi\|65321995\|ref\|ZP_00394954.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|118479769, gi... - gi\|118479769\|ref\|YP_896920.1\| universal stress protein [Bacillus thuringiensis str. Al Hakam], gi\|11...	129.0	[0..137]	[282..21]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESAPAGSK EGVSFGNLPR PEPRTSKDQQ KLSISTDVKK PSHSAPVTPV RSARSSMEQP  60
   61 TFRPVAKNSV TVAPARAAGF CPPQFEEYHH GRSHSLVSPP PSPHFLKRIS FDTFNNKAAT 120
  121 DFSLTLKTQH QAYKWTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.045757
Match:	2r8rA
Description:	No description for 2r8rA was found.

Predicted Domain #2

Region A:
Residues: [138-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSRTFLCGMD GNSYSEVAVD WLFETLLADN DEAVVLRVID PSSKLAEDLS DEQSYRSLAE  60
   61 HIMAGILKKV DDDKAVSIIV ELVVGKPQDM ILRTIHVYSP DSLIVGTRGK ALNSFQSLLS 120
  121 SGSVSKFCLQ KSPIPVIVVR PDRKRVRSKN KRLKDKTRKS YMEILEKSGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits