YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC7D4.09c
Organism:	Schizosaccharomyces pombe
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC7D4.09c.

Description	E-value	Query Range	Subject Range
TECR_DICDI - Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 gi\|60474548, gi\|... - gi\|66826619\|ref\|XP_646664.1\| synaptic glycoprotein SC2-like protein [Dictyostelium discoideum AX4], ...	208.0	[0..44]	[273..78]
gi\|256994, gi\|21... - gi\|256994\|gb\|AAB23534.1\| SC2 [Rattus sp.], gi\|2144098\|pir\|\|I56573 synaptic glycoprotein SC2 [importe... TECR_RAT - Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1	203.0	[0..23]	[273..34]
gi\|109123711 - gi\|109123711\|ref\|XP_001112313.1\| PREDICTED: glycoprotein, synaptic 2 [Macaca mulatta]	203.0	[0..24]	[273..50]
TECR_MOUSE - Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1	202.0	[0..23]	[273..34]
gi\|157750406 - gi\|157750406\|ref\|XP_001678916.1\| Hypothetical protein CBG11196 [Caenorhabditis briggsae AF16] gi\|39590267, gi\|... - gi\|39590267\|emb\|CAE66005.1\| Hypothetical protein CBG11196 [Caenorhabditis briggsae], gi\|187030527\|em...	201.0	[0..46]	[273..78]
gi\|3329386, gi\|1... - gi\|3329386\|gb\|AAC39872.1\| synaptic glycoprotein SC2 spliced variant [Homo sapiens], pir\|\|T50639 syna...	201.0	[0..24]	[273..35]
TECR_BOVIN - Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1	200.0	[0..24]	[273..35]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLNNWYSL LLTEVAAYFT STTLFVSILK NAPSLSWLMK YGGHDNFGLK PPLIATKLEV  60
   61 PKRWFWHFYA FISLLNPLFT FFILNTNFPI PIFKNIKEDL MYSKKLQVLL LIYEIHTLRR 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YENLRFRKSG SKMLAGHYLL GYLFYTHTFL ALLLCGRRSY ENTMSSMQFV GLGIYAIGSI  60
   61 WQNASHEHLI AQKNHSQYLV LKKGCFKWIT GPHYLGEIIV YTGIALIAQH WLIWLVLGWV 120
  121 LCNMVAISSS YACTVKNKEQ SLDFRWTLIP FLY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.327902
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits