YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCPB16A4.05c
Organism:	Schizosaccharomyces pombe
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCPB16A4.05c.

Description	E-value	Query Range	Subject Range
UREG_AZOVD - Urease accessory protein UreG OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ureG PE=3 SV=... gi\|67154225, gi\|... - gi\|67154225\|ref\|ZP_00415970.1\| Urease accessory protein UreG [Azotobacter vinelandii AvOP], ref\|ZP_0...	163.0	[0..82]	[278..1]
gi\|125974317, gi... - gi\|67874956\|ref\|ZP_00504507.1\| Urease accessory protein UreG [Clostridium thermocellum ATCC 27405], ... gi\|196198425, gi... - gi\|196252154\|ref\|ZP_03150816.1\| urease accessory protein UreG [Clostridium thermocellum DSM 4150], g...	162.0	[0..85]	[279..2]
UREG_METFK - Urease accessory protein UreG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=...	162.0	[0..81]	[278..1]
gi\|86608358 - gi\|86608358\|ref\|YP_477120.1\| urease accessory protein UreG [Cyanobacteria bacterium Yellowstone B-Pr... gi\|86556900, gi\|... - gi\|86608358\|ref\|YP_477120.1\| urease accessory protein UreG [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8...	160.0	[0..85]	[283..10]
gi\|49079372 - gi\|49079372\|gb\|AAT49885.1\| PA4893 [synthetic construct]	160.0	[0..82]	[278..1]
UREG_PSEA8 - Urease accessory protein UreG OS=Pseudomonas aeruginosa (strain LESB58) GN=ureG PE=3 SV=1 UREG_PSEAB - Urease accessory protein UreG OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ureG PE=3 SV=1 UREG_PSEAE - Urease accessory protein UreG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / L... gi\|194549373, gi... - gi\|84317502\|ref\|ZP_00965943.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|126197590, gi... - gi\|84323444\|ref\|ZP_00971513.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|107103992 - gi\|107103992\|ref\|ZP_01367910.1\| hypothetical protein PaerPA_01005065 [Pseudomonas aeruginosa PACS2] UREG_PSEAE - Urease accessory protein ureG OS=Pseudomonas aeruginosa GN=ureG PE=3 SV=1	160.0	[0..82]	[278..1]
UREG_PSEA7 - Urease accessory protein UreG OS=Pseudomonas aeruginosa (strain PA7) GN=ureG PE=3 SV=1	159.0	[0..82]	[278..1]
gi\|17228230, gi\|... - gi\|17228230\|ref\|NP_484778.1\| urease accessory protein G [Nostoc sp. PCC 7120], gi\|17130080\|dbj\|BAB72... gi\|25313854 - pir\|\|AE1898 urease accessory protein G [imported] - Nostoc sp. (strain PCC 7120)	159.0	[0..85]	[279..2]
gi\|254435739, gi... - gi\|254435739\|ref\|ZP_05049246.1\| urease accessory protein UreG [Nitrosococcus oceani AFC27], gi\|22440... UREG_NITOC - Urease accessory protein UreG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=ureG PE=3... gi\|207088850 - gi\|207088850\|gb\|EDZ66122.1\| urease accessory protein UreG [Nitrosococcus oceani AFC27]	159.0	[0..82]	[278..1]
UREG_CLOPH - Urease accessory protein UreG OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)...	158.0	[0..85]	[279..2]

Back

Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPFLHKGG SDDSTHHHTH DYDHHNHDHH GHDHHSHDSS SNSSSEAARL QFIQEHGHSH  60
   61 DAMETPGSYL KRELPQFNHR DFSRRAFTIG VGGPVGSGKT ALLLQLCRLL GEKYSIGVVT 120
  121 NDIFTREDQE FLIRNKALPE ERIRAIETGG CPHAAIREDV SGNLVALEEL QSEFNTELLL 180
  181 VESGGDNLAA NYSRDLADFI IYVIDVSGGD KIPRKGGPGI TESDLLIINK TDLAKLVGAD 240
  241 LSVMDRDAKK IRENGPIVFA QVKNQVGMDE ITELILGAAK SAGALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits