YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3B8.06
Organism:	Schizosaccharomyces pombe
Length:	511 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3B8.06.

Description	E-value	Query Range	Subject Range
gi\|46127165, gi\|... - gi\|46127165\|ref\|XP_388136.1\| hypothetical protein FG07960.1 [Gibberella zeae PH-1], gi\|42553734\|gb\|E...	622.0	[0..1]	[510..36]
gi\|67526513, gi\|... - gi\|67526513\|ref\|XP_661318.1\| hypothetical protein AN3714.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	607.0	[0..2]	[511..42]
gi\|28921253, gi\|... - gi\|32421421\|ref\|XP_331154.1\| hypothetical protein [Neurospora crassa], gi\|28921253\|gb\|EAA30563.1\| co... gi\|85093967 - gi\|85093967\|ref\|XP_959799.1\| hypothetical protein NCU02378 [Neurospora crassa OR74A]	606.0	[0..2]	[511..40]
gi\|27803056, gi\|... - gi\|27803056\|emb\|CAD60759.1\| unnamed protein product [Podospora anserina], gi\|188219299\|emb\|CAP49279.... gi\|189091892 - gi\|189091892\|ref\|XP_001929779.1\| [Podospora anserina]	596.0	[0..13]	[511..11]
gi\|39942898, gi\|... - gi\|39942898\|ref\|XP_360986.1\| hypothetical protein MG03529.4 [Magnaporthe grisea 70-15], gb\|EAA51934....	584.0	[0..1]	[511..30]
gi\|190406485 - gi\|190406485\|gb\|EDV09752.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YCV1_YEAST - Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943876 - gi\|151943876\|gb\|EDN62176.1\| conserved protein [Saccharomyces cerevisiae YJM789] YCR061W - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytopla...	546.0	[0..27]	[510..100]
gi\|88184701, gi\|... - gi\|88184701\|gb\|EAQ92169.1\| hypothetical protein CHGG_00404 [Chaetomium globosum CBS 148.51], gi\|1161...	536.0	[0..13]	[511..50]
gi\|83767436 - gi\|83767436\|dbj\|BAE57575.1\| unnamed protein product [Aspergillus oryzae] gi\|169770215 - gi\|169770215\|ref\|XP_001819577.1\| hypothetical protein [Aspergillus oryzae RIB40]	523.0	[0..14]	[511..54]
gi\|159124722 - gi\|159124722\|gb\|EDP49840.1\| integral membrane protein [Aspergillus fumigatus A1163] gi\|66848784, gi\|... - gi\|70992605\|ref\|XP_751151.1\| integral membrane protein [Aspergillus fumigatus Af293], gi\|66848784\|gb...	520.0	[0..4]	[511..39]
gi\|114194884, gi... - gi\|115389966\|ref\|XP_001212488.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	513.0	[0..8]	[511..51]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMHMNSTG DNPIEIDFEN YANHMNKFLM AHIICMIIAY VFILPAGIVL AMAKSKAHIP  60
   61 VQIVYVILTL IGYIFAHISH HKASPENYYK GNIHRPVGRF FMWITFLIAI VGITTSILKK 120
  121 RMLKEYQPAA EAPGAMEDPE QALQRNSLDD GAPLLPREGN SSDEYLPPQS SRRDVSSEKP 180
  181 SI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSISFINIRS WRTIPKKWCV LQVLRYFHRI LGHLWLYVGF FESCTGIVLL AGIFKGQHIF  60
   61 NGLAHWIKGA IFLWYGILSF GEYLGAFSEY GWAWNVVPKQ LSEKRFAKYV PTKEMVESFL 120
  121 LFAYGVSNVW LEHLGNTDGK WNHHDLQHAS LAFMLWWAGL CGILVESKVV HRLLNATLSA 180
  181 TLGQRRSEDS EHSENGLPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [382-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNVFPALTVF FTGIMMSAHD QTNHVSTVIH VLWGRLLAAA AIARICTYIM LYLKPPSSPW  60
   61 PTRPPTEIIT SFCLICGGAM FMASSYDVVN KIRLNEMSPM LIMNISVAFT CIVMGLEVMF 120
  121 LILKGYASSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits