YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1556.05c
Organism:	Schizosaccharomyces pombe
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1556.05c.

Description	E-value	Query Range	Subject Range
gi\|28926234, gi\|... - gi\|32419010\|ref\|XP_329983.1\| hypothetical protein [Neurospora crassa], gi\|28926234\|gb\|EAA35215.1\| hy... gi\|85113040 - gi\|85113040\|ref\|XP_964451.1\| hypothetical protein [Neurospora crassa OR74A]	80.0	[0..4]	[110..1139]
gi\|13345187 - gi\|13345187\|gb\|AAK19244.1\|AF312916_1 reticulocyte binding protein 2 homolog A [Plasmodium falciparum...	79.0	[0..17]	[111..2738]
RBP2A_PLAF7 - Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=1 SV... gi\|33413772 - gi\|33413772\|gb\|AAN39443.1\| normocyte binding protein 2a [Plasmodium falciparum]	79.0	[0..17]	[111..2738]
CGR1_ASPFU - rRNA-processing protein cgrA OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FG... CGR1_ASPFU - rRNA-processing protein cgrA OS=Aspergillus fumigatus GN=cgrA PE=3 SV=1 gi\|159123816 - gi\|159123816\|gb\|EDP48935.1\| rRNA processing protein CgrA [Aspergillus fumigatus A1163]	76.0	[0..2]	[108..10]
CGR1_ASPOR - rRNA-processing protein cgrA OS=Aspergillus oryzae GN=cgrA PE=3 SV=1 gi\|238507531, gi... - gi\|238507531\|ref\|XP_002384967.1\| rRNA processing protein CgrA [Aspergillus flavus NRRL3357], gi\|2206... CGR1_ASPOR - rRNA-processing protein cgrA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cgrA PE=3 SV=1	75.0	[0..3]	[108..11]
rlf2 - chromatin remodeling complex subunit Rlf2 RLF2_SCHPO - Chromatin assembly factor 1 subunit rlf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=r...	74.0	[0..8]	[111..54]
CGR1_ASPTE - rRNA-processing protein cgrA - Aspergillus terreus CGR1_ASPTN - rRNA-processing protein cgrA OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=cgrA PE=3 SV=1	71.0	[0..4]	[108..12]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNGTKGVCV SGKPWKTEKK AYNRSGLADA QRTPYEKRME QKRKLDEIKE REKELKREKE  60
   61 EQRAAHAEKI RTRRQAKADR ERMELLQAKL HQKVIDRRRR REKRNKMLKE R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits