YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13F5.04c
Organism:	Schizosaccharomyces pombe
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13F5.04c.

Description	E-value	Query Range	Subject Range
gi\|70876557 - gi\|70876557\|gb\|EAN89996.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71421620 - gi\|71421620\|ref\|XP_811847.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	120.0	[0..2]	[257..228]
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	116.0	[0..1]	[256..93]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	112.0	[0..9]	[243..1494]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	104.0	[0..3]	[265..212]
gi\|109498800 - gi\|109498800\|ref\|XP_001070215.1\| PREDICTED: similar to proteoglycan 4 [Rattus norvegicus]	102.0	[0..3]	[250..351]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	100.0	[0..8]	[255..1443]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	100.0	[0..8]	[255..837]
gi\|42550131, gi\|... - gi\|46127271\|ref\|XP_388189.1\| hypothetical protein FG08013.1 [Gibberella zeae PH-1], gi\|42550131\|gb\|E...	99.0	[0..2]	[263..364]
gi\|88188037, gi\|... - gi\|88602575\|ref\|YP_502753.1\| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi\|88188...	99.0	[0..2]	[255..1861]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFFFRLVSS FAILRISFLS ITKSIKFCKL RALQVANPQR KAKTPSNHAT EELQQSSTNS  60
   61 TTLPTQEAAV ETNASASHET SFALPTTSPA ASLSISPTKS AAVSSEPNVE ADVKSLSSTP 120
  121 AAPQLNSPSH SYEPTTFPST TSITENLPTI DPTRSTRSSS HIQSLSPESK QTSDGHRPPS 180
  181 PTSITTTSTS IDPSVAFSSK STLATTRTNA PLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [214-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSQPTKASP LNKFSALEAI QSARSHARYA YSALDYEDTT TAIHHLKSAL KLLEEEEQGN  60
   61 HTAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.599	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.428	a.23.5	Hemolysin expression modulating protein HHA
View	Download	0.517	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.490	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.445	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits