YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl23
Organism:	Schizosaccharomyces pombe
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl23.

Description	E-value	Query Range	Subject Range
gi\|83312656, gi\|... - gi\|83312656\|ref\|YP_422920.1\| Ribosomal protein L13 [Magnetospirillum magneticum AMB-1], gi\|82947497\|...	213.0	[0..1]	[153..32]
RL13_CHESB - 50S ribosomal protein L13 OS=Chelativorans sp. (strain BNC1) GN=rplM PE=3 SV=1	212.0	[0..1]	[153..1]
gi\|114771077 - gi\|114771077\|ref\|ZP_01448517.1\| 50S ribosomal protein L13 [alpha proteobacterium HTCC2255] gi\|114771077, gi... - gi\|114771077\|ref\|ZP_01448517.1\| 50S ribosomal protein L13 [alpha proteobacterium HTCC2255], gi\|11454...	212.0	[0..1]	[153..1]
gi\|25295180 - pir\|\|AB2730 50S ribosomal protein L13 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) RL13_AGRFC - 50S ribosomal protein L13 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplM PE=3 SV=2	211.0	[0..1]	[153..1]
RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1 RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplM PE=3 SV=1	211.0	[0..1]	[144..1]
gi\|98975816, gi\|... - gi\|98975816\|gb\|ABF51967.1\| LSU ribosomal protein L13P [Sphingopyxis alaskensis RB2256], gi\|68540077\|...	211.0	[0..2]	[152..6]
RL13_SINMW - 50S ribosomal protein L13 OS=Sinorhizobium medicae (strain WSM419) GN=rplM PE=3 SV=1	210.0	[0..1]	[153..1]
RL13_RHIME - 50S ribosomal protein L13 OS=Rhizobium meliloti (strain 1021) GN=rplM PE=3 SV=1 RL13_RHIME - 50S ribosomal protein L13 OS=Rhizobium meliloti GN=rplM PE=3 SV=1	210.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLNGQTAL AYAKVWHHVS AKNVPLGRLA SQIATTLMGK HKPIYHPAAD CGDVVVVTDC  60
   61 SEIGISGRKL ENHKYYSHSG QPGHLKEWTM EEMAAKRGHK DLLRRAVGGM LPRNKLWDRR 120
  121 MKRLYIYDGA EHPYKANIFR SYHNPVSSQI AKELFSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1p85H
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
nucleic acid binding	0.592978734154454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: