YRC Public Data Repository - Protein Structure Prediction

Protein:	ase1
Organism:	Schizosaccharomyces pombe
Length:	731 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ase1.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	305.0	[0..2]	[490..2416]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	244.0	[0..2]	[502..1369]
gi\|76643953 - gi\|76643953\|ref\|XP_882544.1\| PREDICTED: similar to Myosin-8 (Myosin heavy chain, skeletal muscle, pe...	233.0	[0..2]	[495..1126]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1	213.0	[0..2]	[500..1422]

Back

Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTVMMDDIQ STDSIAEKDN HSNNESNFTW KAFREQVEKH FSKIERLHQV LGTDGDNSSL  60
   61 FELFTTAMNA QLHEMEQCQK KLEDDCQQRI DSIRFLVSSL KLTDDTSSLK IESPLIQCLN 120
  121 RLSMVEGQYM AQYDQKLSTI KEMYHKLESY CNRLGSPFVL PDFENSFLSD VSDAFTESLR 180
  181 GRINEAEKEI DARLEVINSF EEEILGLWSE LGVEPADVPQ YEQLLESHTN RPNDVYVTQE 240
  241 LIDQLCKQKE VFSAEKEKRS DHLKSIQSEV S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [272-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLWNKLQVSP NEQSQFGDSS NINQENISLW ETELEKLHQL KKEHLPIFLE DCRQQILQLW  60
   61 DSLFYSEEQR KSFTPMYED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	2dfsA
Description:	No description for 2dfsA was found.

Predicted Domain #3

Region A:
Residues: [351-731]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IITEQVLTAH ENYIKQLEAE VSANKSFLSL INRYASLIEG KKELEASSND ASRLTQRGRR  60
   61 DPGLLLREEK IRKRLSRELP KVQSLLIPEI TAWEERNGRT FLFYDEPLLK ICQEATQPKS 120
  121 LYRSASAAAN RPKTATTTDS VNRTPSQRGR VAVPSTPSVR SASRAMTSPR TPLPRVKNTQ 180
  181 NPSRSISAEP PSATSTANRR HPTANRIDIN ARLNSASRSR SANMIRQGAN GSDSNMSSSP 240
  241 VSGNSNTPFN KFPNSVSRNT HFESKSPHPN YSRTPHETYS KASSKNVPLS PPKQRVVNEH 300
  301 ALNIMSEKLQ RTNLKEQTPE MDIENSSQNL PFSPMKISPI RASPVKTIPS SPSPTTNIFS 360
  361 APLNNITNCT PMEDEWGEEG F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.154902
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits