YRC Public Data Repository - Protein Structure Prediction

Protein:	vps32
Organism:	Schizosaccharomyces pombe
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps32.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	193.0	[0..3]	[216..580]
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	176.0	[0..1]	[215..234]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	161.0	[0..3]	[216..247]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	153.0	[0..1]	[218..114]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	150.0	[0..1]	[209..49]
gi\|38103660, gi\|... - gi\|39944168\|ref\|XP_361621.1\| hypothetical protein MG04095.4 [Magnaporthe grisea 70-15], gb\|EAA50336....	149.0	[0..1]	[222..133]
gi\|39583126, gi\|... - gi\|39583126\|emb\|CAE60666.1\| Hypothetical protein CBG04319 [Caenorhabditis briggsae], gi\|187035913\|em... gi\|157750238 - gi\|157750238\|ref\|XP_001678832.1\| Hypothetical protein CBG04319 [Caenorhabditis briggsae AF16]	145.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFLRWFGG NRSKDTTKDT IVRFQEMLAL YDKKEEVLER QIAEQTEIAR KNATTNKRLA  60
   61 LTALKRKKMH ENELVKIEGS RNNIEQQLFS IQNANLNFET LQAMRQGAEA MKSIQRGMDA 120
  121 DKVDQIMDKI RDQQTISEEI STMISTPVGL NAEIDEDELA NELDELQQME LDSKMLGAEK 180
  181 PPVHTPAVPA VPSQVKDLPS ISKPQELDEE EELRKLQAEF SL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits