YRC Public Data Repository - Protein Structure Prediction

Protein:	skp1
Organism:	Schizosaccharomyces pombe
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skp1.

Description	E-value	Query Range	Subject Range
gi\|73948993 - gi\|73948993\|ref\|XP_535176.2\| PREDICTED: similar to S-phase kinase-associated protein 1A isoform b [C...	249.0	[0..1]	[161..82]
gi\|146387063, gi... - gi\|146387063\|pdb\|2OVR\|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex, gi\|146387060\|pdb\|2O...	243.0	[0..1]	[161..1]
gi\|114601681, gi... - gi\|114601685\|ref\|XP_001166324.1\| PREDICTED: similar to OCP-II protein isoform 8 [Pan troglodytes], g...	242.0	[0..1]	[161..12]
gi\|26347143, gi\|... - gi\|31560543\|ref\|NP_035673.2\| S-phase kinase-associated protein 1A [Mus musculus], gi\|26347143\|dbj\|BA...	241.0	[0..1]	[161..1]
gi\|29841010 - gi\|29841010\|gb\|AAP06023.1\| SJCHGC06138 protein [Schistosoma japonicum]	240.0	[0..1]	[161..1]
gi\|221221226, gi... - gi\|221221806\|gb\|ACM09564.1\| S-phase kinase-associated protein 1 [Salmo salar], gi\|221221226\|gb\|ACM09... gi\|225704136, gi... - gi\|225704136\|gb\|ACO07914.1\| S-phase kinase-associated protein 1A [Oncorhynchus mykiss], gi\|225703580... SKP1_RAT - S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=1 SV=3 gi\|229367476 - gi\|229367476\|gb\|ACQ58718.1\| S-phase kinase-associated protein 1 [Anoplopoma fimbria] SKP1_MOUSE - S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3	239.0	[0..1]	[161..1]
gi\|55731584\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55731584 - gi\|55731584\|emb\|CAH92499.1\| hypothetical protein [Pongo abelii]	238.0	[0..1]	[161..1]
gi\|37748746, gi\|... - gi\|49619153\|gb\|AAT68161.1\| S-phase kinase-associated protein 1A [Danio rerio], gi\|41152201\|ref\|NP_95...	237.0	[0..1]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIKLISSD NEEFVVDQLI AERSMLIKNM LEDVGEINVP IPLPNVSSNV LRKVLEWCEH  60
   61 HKNDLYSGTE EESDIRLKKS TDIDEWDRKF MAVDQEMLFE IVLASNYLDI KPLLDTGCKT 120
  121 VANMIRGKSP EDIRKTFNIP NDFTPEEEEQ IRKENEWAED R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1fqvB
Description:	Cyclin A/CDK2-associated p45, Skp1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits