YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21.02
Organism:	Schizosaccharomyces pombe
Length:	511 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21.02.

Description	E-value	Query Range	Subject Range
gi\|170940070, gi... - gi\|27764337\|emb\|CAD60617.1\| unnamed protein product [Podospora anserina], gi\|170940070\|emb\|CAP65297.... gi\|171680885 - gi\|171680885\|ref\|XP_001905387.1\| unnamed protein product [Podospora anserina]	633.0	[0..1]	[505..33]
gi\|42554542, gi\|... - gi\|46135755\|ref\|XP_389569.1\| hypothetical protein FG09393.1 [Gibberella zeae PH-1], gi\|42554542\|gb\|E...	627.0	[0..1]	[505..1]
RTC5_NEUCR - Restriction of telomere capping protein 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS... gi\|28920942, gi\|... - gi\|32421569\|ref\|XP_331228.1\| hypothetical protein [Neurospora crassa], gi\|28920942\|gb\|EAA30271.1\| co...	615.0	[0..1]	[505..1]
gi\|39971923, gi\|... - gi\|39971923\|ref\|XP_367352.1\| hypothetical protein MG07277.4 [Magnaporthe grisea 70-15], gb\|EAA56922....	590.0	[0..1]	[505..1]
gi\|44983903 - gi\|44983903\|gb\|AAS52939.1\| AER258Cp [Ashbya gossypii ATCC 10895] gi\|45190861, gi\|... - gi\|45190861\|ref\|NP_985115.1\| AER258Cp [Ashbya gossypii ATCC 10895], gi\|44983903\|gb\|AAS52939.1\| AER25...	553.0	[0..25]	[505..31]
gi\|116200582, gi... - gi\|88175550\|gb\|EAQ83018.1\| hypothetical protein CHGG_10836 [Chaetomium globosum CBS 148.51], gi\|1162...	517.0	[0..1]	[505..1]
RTC5_EMENI - Restriction of telomere capping protein 5 OS=Emericella nidulans GN=rtc5 PE=3 SV=1 RTC5_EMENI - Restriction of telomere capping protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS ...	475.0	[0..18]	[497..34]
RTC5_YEAS1 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RTC5 PE=3 ... RTC5_YEAS2 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain JAY291) GN=RTC5 PE=3 S... RTC5_YEAST - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... RTC5 - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytopla... RTC5_YEAS8 - Restriction of telomere capping protein 5 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise ...	442.0	[0..130]	[505..144]
gi\|111071154 - gi\|111071154\|gb\|EAT92274.1\| hypothetical protein SNOG_00779 [Phaeosphaeria nodorum SN15]	387.0	[0..1]	[505..1]
gi\|83769129 - gi\|83769129\|dbj\|BAE59266.1\| unnamed protein product [Aspergillus oryzae] RTC5_ASPFN - Restriction of telomere capping protein 5 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / N... RTC5_ASPOR - Restriction of telomere capping protein 5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rtc5...	363.0	[0..6]	[497..4]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKESQFKV LWQLQTHEEY MKQTSSFLRD FNALERYNLK ENFEALSSFD NGEKIWVEDA  60
   61 FTTFFGIPDV IQLSPFFYRS ACSFGRDLNI NRQRLTFSAL ARFLASYTGR HKDVWSDFES 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLMIIASWCD SFPKFRVEVL KNSKQISRLI HSDVQNISNF FDQNFGIRRS NIYQLCLLLL  60
   61 CISKLKPGES VGCHINSFLD SMFVKEQKAA FYVLQGISPD ISSNIIKPSY LLHFLESNPY 120
  121 FLKSLGSLFE LALFPHSAHN QKVQDDVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [269-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNDFAILSP LIHAQICFFL PKSVWQVNGL TSLFRASFHG YSMYALERKM CNYHNPSILL  60
   61 IKAKKINANH KSSSRPISLD ATIPRKYPPH CIGTDKAVPQ KFGADFHNEN ILLGAYISTR 120
  121 WRQSHMGFFG DHSTLLFQLQ PIHQVYYASN LDKNYCMFDK NVGLGFGLSR HKVTNKVQYD 180
  181 VPGVCMYIDD GLEYGLFRHA GDGAFKPATN YENFEYEERF LIQDLEVIGV DTTKPVEPIH 240
  241 IGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.376751
Match:	PF07534.2
Description:	No description for PF07534.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits