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View Structure Prediction Details

Protein: spo9
Organism: Schizosaccharomyces pombe
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spo9.

Description E-value Query
Range
Subject
Range
FPPS1_PARAR - Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1
306.0 [0..7] [351..1]
FPPS1_ARATH - Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2
304.0 [0..2] [351..37]
gi|1922251 - gi|1922251|emb|CAA72793.1| farnesyl pyrophosphate synthase [Gossypium arboreum]
302.0 [0..9] [351..2]
gi|149048093, gi... - gi|37590777|gb|AAH59125.1| Farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethy...
302.0 [0..3] [351..5]
FPPS2_ARTSI - Farnesyl diphosphate synthase 2 OS=Artemisia spiciformis GN=FDS-2 PE=1 SV=1
301.0 [0..7] [351..1]
gi|14573639 - gi|14573639|gb|AAK68152.1| farnesyldiphosphate synthase [x Citrofortunella microcarpa]
300.0 [0..9] [351..2]

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Predicted Domain #1
Region A:
Residues: [1-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNDFNEKNG IKKRLLDFFP VVLEGIREIL ESMQYFPEET EKLLYSIKRN TLGGKNNRGL  60
   61 AVLQSLTSLI NRELEEAEFR DAALLGWLIE ILQGCFLMAD DIMDQSIKRR GLDCWYLVVG 120
  121 VRRAINESQL LEACIPLLIR KYFRNMPYYV DLLDTFREVT FLTELGQQED LLSSRDGEAS 180
  181 LRSFDLMKYD FIITYKTSFY SFYLPIKCAL LLSRNSNQKA YDTTIKLSKL LGYYFQVQDD 240
  241 YLDCFGDYTV LGKVGMDIQD NKCTWLVCYA EKFASADQLN LLRAHYGKAG SENIAVIKQL 300
  301 YHELQIPELY HKFEDDMVDS ISKEIDLIDE STGLKKCIFT KFFQLIYKRS R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 1yq7A
Description: Human farnesyl diphosphate synthase complexed with risedronate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle