YRC Public Data Repository - Protein Structure Prediction

Protein:	rsm23
Organism:	Schizosaccharomyces pombe
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsm23.

Description	E-value	Query Range	Subject Range
gi\|28925624, gi\|... - gi\|32416696\|ref\|XP_328826.1\| hypothetical protein [Neurospora crassa], gi\|28925624\|gb\|EAA34643.1\| co... gi\|85111317 - gi\|85111317\|ref\|XP_963879.1\| hypothetical protein NCU08120 [Neurospora crassa OR74A]	444.0	[0..35]	[471..28]
gi\|39958959, gi\|... - gi\|39958959\|ref\|XP_364456.1\| hypothetical protein MGG_09301 [Magnaporthe grisea 70-15], gb\|EAA55494....	433.0	[0..59]	[471..61]
gi\|61357224, gi\|... - gi\|61359294\|gb\|AAX41696.1\| death associated protein 3 [synthetic construct], gi\|61357224\|gb\|AAX41354... DAP3 - death associated protein 3	417.0	[0..114]	[475..38]
gi\|61367201, gi\|... - gi\|61369407\|gb\|AAX43331.1\| death associated protein 3 [synthetic construct], gi\|61367201\|gb\|AAX42965...	417.0	[0..114]	[475..38]
gi\|55730281 - gi\|55730281\|emb\|CAH91863.1\| hypothetical protein [Pongo abelii] gi\|197098438 - gi\|197098438\|ref\|NP_001127473.1\| death associated protein 3 [Pongo abelii]	412.0	[0..114]	[475..38]
gi\|109017499 - gi\|109017499\|ref\|XP_001113361.1\| PREDICTED: similar to death-associated protein 3 [Macaca mulatta]	409.0	[0..114]	[475..38]
gi\|26328099 - gi\|26328099\|dbj\|BAC27790.1\| unnamed protein product [Mus musculus]	406.0	[0..95]	[475..16]
gi\|55249775, gi\|... - gi\|58865478\|ref\|NP_001011950.1\| death associated protein 3 [Rattus norvegicus], gi\|55249775\|gb\|AAH85...	401.0	[0..95]	[475..11]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPKFRSRSS IIKNTERISN ILSGGKLTVC GSKLGGLYTF EKCTFNKYYS SSQYQHTGRP  60
   61 VGGNIHSSSN QQRQKNSEAP RINEIPPSTS SVEKSTTIPN SSVVLDHLLN EGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTLEEVKPSE IHPHMSWSSK SEGKMFKIPE ELLNKLNGFG ALEKQKKSFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [164-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFTSASLLHR KITTELVNVL QRSKDQGTKD GRFLLDGAPG SGRSIALIQA ELFALSQPNF  60
   61 IVLPVHNCEG WVNSTSSYGY DEQLKLWVQP DLIKGFLTSV MKTNSDKLKK LKTFESHELL 120
  121 QNECIPAGTD LLSFLHKLIA SSNAPKSLEI FLQELNNNTK SNSNMKVLLV IDNISILSVV 180
  181 TKYKDKKNNF LPPKDFYFIN LLFKYISGSL TFNRGTVLAA TSSQPRVSTP SLDIALGVAH 240
  241 RNPY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [408-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSSDETILDS LQSVHILNME PYTLDESRRM MEYLVSSNVC LEKVDNYLQN HVLSGGNPRK  60
   61 FFDACTRLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits