YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.15
Organism:	Schizosaccharomyces pombe
Length:	462 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.15.

Description	E-value	Query Range	Subject Range
gi\|115281842, gi... - gi\|74019131\|ref\|ZP_00689749.1\| PhoH-like protein [Burkholderia ambifaria AMMD], gi\|72608118\|gb\|EAO44...	321.0	[0..31]	[445..111]
gi\|91783423, gi\|... - gi\|91783423\|ref\|YP_558629.1\| putative ATPase, PhoH-like protein [Burkholderia xenovorans LB400], gi\|...	317.0	[0..27]	[445..65]
gi\|83720282, gi\|... - gi\|83720282\|ref\|YP_442708.1\| PhoH family protein [Burkholderia thailandensis E264], gi\|83654107\|gb\|A...	311.0	[0..59]	[445..163]
gi\|78066635, gi\|... - gi\|78066635\|ref\|YP_369404.1\| PhoH-like protein [Burkholderia sp. 383], gi\|77967380\|gb\|ABB08760.1\| Ph...	311.0	[0..50]	[445..123]
gi\|94310908, gi\|... - gi\|94310908\|ref\|YP_584118.1\| PhoH-like protein [Ralstonia metallidurans CH34], gi\|93354760\|gb\|ABF088...	308.0	[0..31]	[445..63]
gi\|134139053, gi... - gi\|67543782\|ref\|ZP_00421713.1\| PhoH-like protein [Burkholderia vietnamiensis G4], gi\|67534950\|gb\|EAM...	308.0	[0..53]	[445..132]
gi\|116647975, gi... - gi\|67662846\|ref\|ZP_00460132.1\| PhoH-like protein [Burkholderia cenocepacia HI2424], gi\|67103509\|gb\|E...	308.0	[0..53]	[445..127]
gi\|72119098, gi\|... - gi\|73541685\|ref\|YP_296205.1\| PhoH-like protein [Ralstonia eutropha JMP134], gi\|72119098\|gb\|AAZ61361....	308.0	[0..42]	[445..77]
gi\|76581546, gi\|... - gi\|76812093\|ref\|YP_333802.1\| PhoH family protein [Burkholderia pseudomallei 1710b], gi\|76581546\|gb\|A...	307.0	[0..64]	[445..165]
gi\|17428330 - gi\|17428330\|emb\|CAD15018.1\| putative phoh-like protein [Ralstonia solanacearum GMI1000] gi\|17546035 - gi\|17546035\|ref\|NP_519437.1\| hypothetical protein RSc1316 [Ralstonia solanacearum GMI1000]	306.0	[0..38]	[445..82]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDDQAGID FVTESINSER ARNRWSTSHI PSLSEINPSS FQSPSPSPFA SSTSLASKPA  60
   61 RYSKPLGLFV LDTNFLLSHL SLCQNLIEFL TARCPRLVVV LPWTVLQELD GLKSESSSTC 120
  121 GYLARQAHNF LLQCFRSNVS SLRGQKVHEH CSSTEKGDDA ILDCCIYYQE EKLIPAVLLS 180
  181 DDKNLSIKAA VHHIQSLSFS KGLEAASIVQ TS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2dokA
Description:	No description for 2dokA was found.

Predicted Domain #2

Region A:
Residues: [213-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSAFSSNSE NLENLSMDID LTVSQPLATA TNHRNQGAST VDIPMDRTHD NSIWASRYAH  60
   61 FPPYDKKKDT TRSAADYIPY TYTALTKEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [302-462]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILHASHPRAC KLLDQITKIM VEETAFLLSR HLLKLWGDYD LAMTKLLASP QFPPQNINDV  60
   61 GHELYIHWYT CFDGYLPAQE RSNLKSKAEL WNEWMLWAER GIGIGPKNQE ELQTYVTFWS 120
  121 NIWTLLSRRE ILGDQASTYI GFREQNIEKW VERSGRERIL S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits