YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2A9.05c
Organism:	Schizosaccharomyces pombe
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2A9.05c.

Description	E-value	Query Range	Subject Range
gi\|109113403 - gi\|109113403\|ref\|XP_001084390.1\| PREDICTED: similar to Protein FAM18B [Macaca mulatta]	282.0	[0..16]	[219..1]
TV23B_MOUSE - Golgi apparatus membrane protein TVP23 homolog B OS=Mus musculus GN=Tvp23b PE=1 SV=1	282.0	[0..16]	[219..1]
TV23B_PONAB - Golgi apparatus membrane protein TVP23 homolog B OS=Pongo abelii GN=TVP23B PE=2 SV=1 FA18B_PONPY - Protein FAM18B - Pongo pygmaeus (Orangutan)	282.0	[0..16]	[219..1]
gi\|114587678 - gi\|114587678\|ref\|XP_511818.2\| PREDICTED: hypothetical protein [Pan troglodytes]	281.0	[0..16]	[219..1]
gi\|14250060, gi\|... - gi\|148747574\|ref\|NP_057162.4\| hypothetical protein LOC51030 [Homo sapiens], gi\|14250060\|gb\|AAH08430....	280.0	[0..16]	[219..1]
TV23B_BOVIN - Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus GN=TVP23B PE=2 SV=1	277.0	[0..16]	[219..1]
gi\|73956070 - gi\|73956070\|ref\|XP_546636.2\| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris]	277.0	[0..16]	[219..1]
gi\|205277356, gi... - gi\|205277356\|ref\|NP_001101038.2\| hypothetical protein LOC687358 [Rattus norvegicus], gi\|149052915\|gb...	276.0	[0..16]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSLDRNLY VDNHITLTKM DYQNTETIAE QERNASRLPQ MFQMSSHPVA LFFFLLFRTG  60
   61 AIVAYILGMF FTSSFMLLFI VIFTLLAVDL WTVKNVSGRL LVGLRWRNET GVDGESIWIF 120
  121 ESADPSRPRN AVDQKTFWYA LYLYPFIWII LGIVAIIRFE FLWLALVAVA IGLTSVNTAA 180
  181 YSRCDKDAKR RWATELADSN SSGFVSRFLS RAFIKRFIG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.920819
Match:	PF05832.3
Description:	No description for PF05832.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits