YRC Public Data Repository - Protein Structure Prediction

Protein:	skb5
Organism:	Schizosaccharomyces pombe
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for skb5.

Description	E-value	Query Range	Subject Range
gi\|223627 - gi\|223627\|prf\|\|0903255A protein v-src	125.0	[0..2]	[138..249]
SRC_AVISS - Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain S1) GN=V-SRC PE=3 SV...	124.0	[0..2]	[138..3]
SRC_CHICK - Proto-oncogene tyrosine-protein kinase Src OS=Gallus gallus GN=SRC PE=1 SV=4	124.0	[0..2]	[138..3]
SRC_AVIST - Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain S2) GN=V-SRC PE=3 SV...	123.0	[0..2]	[138..3]
SRC_RSVH1 - Tyrosine-protein kinase transforming protein Src OS=Rous sarcoma virus (strain H-19) GN=V-SRC PE=1 S... gi\|61707, gi\|66794 - pir\|\|OKFVYR protein-tyrosine kinase (EC 2.7.1.112) src - Rous sarcoma virus (strain H-19), gi\|61707...	123.0	[0..2]	[138..3]
gi\|108737104 - gi\|108737104\|ref\|YP_628286.1\| protein-tyrosine kinase [Y73 sarcoma virus] gi\|347052 - gi\|347052\|gb\|AAC37877.1\| protein-tyrosine kinase [Avian sarcoma virus PR2257/16] gi\|347052 - gi\|347052\|gb\|AAC37877.1\| protein-tyrosine kinase	122.0	[0..2]	[138..3]
gi\|210265 - gi\|210265\|gb\|AAA42583.1\| p66-src protein gi\|394713 - gi\|394713\|emb\|CAA36156.1\| src protein [Avian sarcoma virus] SRC_AVIS2 - Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain PR2257) GN=V-SRC PE=...	122.0	[0..2]	[138..3]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEETEEDYL VVGRDYLYPP DHELHYGFHA RVIEEEEERF VDDTFDETIE GSDDSESIDD  60
   61 TEVFYDAEES ESTHPSASFN VLADAVALYD FEPLHDNELG FTTGQRLCIL SESSDGWLIA 120
  121 YDDASGRSGL VPETFVKLEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	2h8hA
Description:	No description for 2h8hA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.26122265188329	bayes_pls_golite062009
protein binding	0.878430453030071	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: