YRC Public Data Repository - Protein Structure Prediction

Protein:	sec2
Organism:	Schizosaccharomyces pombe
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec2.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	207.0	[0..1]	[420..2310]
gi\|109097615 - gi\|109097615\|ref\|XP_001108518.1\| PREDICTED: similar to RAB3A interacting protein isoform alpha 2 [Ma...	170.0	[0..203]	[524..310]
gi\|73968740 - gi\|73968740\|ref\|XP_538280.2\| PREDICTED: similar to RAB3A interacting protein isoform alpha 2 [Canis ...	167.0	[0..203]	[524..198]
gi\|4249701 - gi\|4249701\|gb\|AAD13772.1\| myosin heavy chain [Rana catesbeiana]	155.0	[0..2]	[441..205]
gi\|86438038, gi\|... - gi\|86438038\|gb\|AAI12788.1\| RAB3A interacting protein (rabin3) [Bos taurus], gi\|114052362\|ref\|NP_0010...	153.0	[0..203]	[524..151]
gi\|114645805 - gi\|114645805\|ref\|XP_001156520.1\| PREDICTED: RAB3A interacting protein isoform 5 [Pan troglodytes] RAB3IP - RAB3A interacting protein (rabin3)	153.0	[0..203]	[524..167]
gi\|50757621 - gi\|50757621\|ref\|XP_415581.1\| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]	152.0	[0..2]	[423..1419]
gi\|89266794 - gi\|89266794\|emb\|CAJ83556.1\| RAB3A interacting protein (rabin3) [Xenopus tropicalis]	152.0	[0..225]	[524..156]

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Predicted Domain #1

Region A:
Residues: [1-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDVSNVRVK PNQHPYEKEV NGKLMSQEEI LSQKLVAAIE RQAALDDKYA TEVHRNEALS  60
   61 ERIRELEAKL SAKKSFDEEL VKFHNLEEKL QLTETKCRNA ESEKSRVENE LEDLTSSLFE 120
  121 EANRMVANAR KETVASEKRV NQLKKQLVDA ETLLSSTQHQ LTELKDVMHS MSDSHEQNNA 180
  181 LHPPLSRTTS FVADNVSVGS FASSTSGLDI LTGTSARESL DAKEISSDKH LNISGERPAT 240
  241 FPNPTFIEGS DERRSASSLG HRTNNNQNQL IRFSTQIRSS STSPPRSPLI ISDSPSSSII 300
  301 HNPHPTHPSA SAMNYMNPCF LEFHAFFNYP MKFARSRSAY STSANYSNTP PRNTVTPSTA 360
  361 RSSTLSQNPS SSSNSIPLIS RNLRDFSFFK RCLEEDIEPT LRLDHASGLS WLTRRSVFTA 420
  421 ILESSLIINP LHST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [435-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLLSSQPCSL CGFNRTQPLR QFEFRSRPDS TSHASCTYCV ARLRSVCNFV AFLHQICKGV  60
   61 WSSCSLEKAW DECLKKREAM FLSRVGLAKE LEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits