YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC823.12
Organism:	Schizosaccharomyces pombe
Length:	906 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC823.12.

Description	E-value	Query Range	Subject Range
gi\|11359661, gi\|... - gi\|32409593\|ref\|XP_325277.1\| related to PEP5 protein [MIPS] [Neurospora crassa], gi\|28924917\|gb\|EAA3... gi\|85074625 - gi\|85074625\|ref\|XP_963245.1\| hypothetical protein NCU05422.1 [Neurospora crassa OR74A]	523.0	[0..8]	[897..5]
gi\|90298885, gi\|... - gi\|90298885\|gb\|EAS28516.1\| hypothetical protein CIMG_09720 [Coccidioides immitis RS], gi\|119175896\|r...	501.0	[0..8]	[903..680]
gi\|49090080, gi\|... - gi\|67524011\|ref\|XP_660065.1\| hypothetical protein AN2461.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	482.0	[0..5]	[872..3]
gi\|66848562, gi\|... - gi\|70992161\|ref\|XP_750929.1\| vacuolar protein sorting protein (VPS11) [Aspergillus fumigatus Af293],...	477.0	[0..6]	[903..12]
gi\|16416079 - gi\|16416079\|emb\|CAB91487.2\| related to PEP5 protein [Neurospora crassa]	475.0	[0..8]	[897..5]
VPS11_MOUSE - Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus GN=Vps11 PE=1 SV=3	473.0	[0..1]	[903..1]
gi\|111064453 - gi\|111064453\|gb\|EAT85573.1\| hypothetical protein SNOG_06922 [Phaeosphaeria nodorum SN15]	473.0	[0..7]	[903..8]
gi\|169772691 - gi\|169772691\|ref\|XP_001820814.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768675 - gi\|83768675\|dbj\|BAE58812.1\| unnamed protein product [Aspergillus oryzae]	472.0	[0..5]	[903..3]
gi\|46109460, gi\|... - gi\|46109460\|ref\|XP_381788.1\| hypothetical protein FG01612.1 [Gibberella zeae PH-1], gi\|42544695\|gb\|E...	468.0	[0..7]	[903..4]
gi\|115388311, gi... - gi\|115388311\|ref\|XP_001211661.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	461.0	[0..24]	[903..5]

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Predicted Domain #1

Region A:
Residues: [1-843]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFIKNWKR ITLFQVKAIE ENIDRLTSSF SSNGELVVFA TAFGDVSIYN SSFKSLQSIK  60
   61 VEDESSIQQI LWLDNKTFLL FSNVEGGTGT NSTVIIYAFS QADENEPPQF VLVTTHKFSI 120
  121 NESPYPIIAV SQSPIDKTIA CGFGGGLVSC YHGNPLRERG IKNSYSHNLG EPITGLTYLD 180
  181 DQSSVLFIAT TNKTYSLSGK SLSCLDNTGV SLNCSSSCKT TPLQSREKNS SSFVCTRSSG 240
  241 LTFYDSKREK ICFTFPGEKH YMTVMGSILA LCYTPTLGTD SSTNEGLKKS FSSSSSIRKA 300
  301 DASRNPAFPP RLLLVDLSRN LIVWEGHLKD VAVSILPLKH GFLVVTADDN VFELKRITLQ 360
  361 EEISLLCQKM MYNLAISLAK KENMDIEFRE SLMRDYASFL FRRGDFSASM DWYIRSIKSI 420
  421 DIPSVCLEFL KAQEIKQLIR LLEELIKTGL ATSDHRLLLL SCYVEIHDSP SIRKLIDIGE 480
  481 IDFDQAFKIC YDSNLLDEAK HLAIRFNNNE RVLDVLVESE QYSEALRFFE SLPPSNLLPL 540
  541 LLKYGRVLLD KLPEKTTNIF IQFYSNSHRG DLSTSESKGE LKTAKSLRQT YLSLLPYAQV 600
  601 ANFSLPPSLY EISPSQEENQ RAALFSEDVS YTAPSPQTCF HIFLNHNSEL ISFLEGILPN 660
  661 ASPNYKTLIN TCLFEAYIRE SFASSNVEKQ EFWQEKSNSL LKKVEKNVDL NAVFLISQIL 720
  721 GFDDGVRFVQ GKSGQTLDIF RSFCQQNDIE RALKMVRVHG PDQQELYIMM LNCFASLENV 780
  781 DSWYQDINEI VNIIVSQRLI SPTQLLDILG KSVNIKLEHI SDSMQSVLDN YRESISKQNE 840
  841 AIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1xi4A
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [844-906]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRDIEEIT SQLSILRTRA FVVQESKCST CGIDLELPMV HFRCGHSYHQ RCVEDECIRC  60
   61 RWL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.4
Match:	1v87A
Description:	Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits