YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB24D3.03
Organism:	Schizosaccharomyces pombe
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB24D3.03.

Description	E-value	Query Range	Subject Range
gi\|46110649, gi\|... - gi\|46110649\|ref\|XP_382382.1\| hypothetical protein FG02206.1 [Gibberella zeae PH-1], gi\|42545337\|gb\|E...	384.0	[0..16]	[381..11]
gi\|145010167, gi... - gi\|39969847\|ref\|XP_366314.1\| hypothetical protein MGG_10533 [Magnaporthe grisea 70-15], gb\|EAA46839....	379.0	[0..33]	[381..43]
SPEB1_SCHPO - Putative agmatinase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.09 PE=3 SV=... SPAC11D3.09 - agmatinase	376.0	[0..22]	[374..39]
gi\|159126939 - gi\|159126939\|gb\|EDP52055.1\| agmatinase, putative [Aspergillus fumigatus A1163] gi\|66850972, gi\|... - gi\|70997163\|ref\|XP_753336.1\| agmatinase [Aspergillus fumigatus Af293], gi\|66850972\|gb\|EAL91298.1\| ag...	375.0	[0..15]	[378..20]
gi\|85102976 - gi\|85102976\|ref\|XP_961434.1\| hypothetical protein NCU01348 [Neurospora crassa OR74A] gi\|16944651, gi\|... - gi\|32412722\|ref\|XP_326841.1\| hypothetical protein [Neurospora crassa], gi\|28922979\|gb\|EAA32198.1\| hy...	369.0	[0..15]	[378..20]
gi\|83772901 - gi\|83772901\|dbj\|BAE63029.1\| unnamed protein product [Aspergillus oryzae] gi\|238500027, gi... - gi\|238500027\|ref\|XP_002381248.1\| agmatinase, putative [Aspergillus flavus NRRL3357], gi\|220693001\|gb... gi\|169779395 - gi\|169779395\|ref\|XP_001824162.1\| hypothetical protein [Aspergillus oryzae RIB40]	369.0	[0..33]	[373..42]
gi\|115399562, gi... - gi\|115399562\|ref\|XP_001215370.1\| hypothetical protein ATEG_06192 [Aspergillus terreus NIH2624], gi\|1...	363.0	[0..17]	[378..23]
gi\|169624790, gi... - gi\|169624790\|ref\|XP_001805800.1\| hypothetical protein SNOG_15656 [Phaeosphaeria nodorum SN15], gi\|11...	363.0	[0..27]	[380..31]
gi\|49101877, gi\|... - gi\|67541398\|ref\|XP_664473.1\| hypothetical protein AN6869.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	357.0	[0..33]	[378..43]

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Predicted Domain #1

Region A:
Residues: [1-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGFQEKNP VFVKEKQSPF YAVPSNYEEV EFSSIVEPMY SGIATFGRLE NVECLSKRSE  60
   61 DFDIAFIGMP FDTGTSYRPG ARFGPSSLRE GSRRINTKYG AVNVPLEINP FKSWAKLVDC 120
  121 GDIPVTTYDI LKAMDQLESA YFQLIARKPS SFTDHDGFAK NDTVLPRVLS LGGDHTIVLP 180
  181 ILRALHRVYG QPISVIHFDS HLDTWAPGLI GDGDEADGIN HGSYFYFASQ EGIMSKDANI 240
  241 HAGIRTPISS FSDYDDDVDC GFKIIEAREI DDLGIDGIVK KIRDRVGDNL VYLSIDIDVL 300
  301 DPAFAPATGT PETGGWSSRE MRAILRGLQG LKFVGADLVE VAPAYDVAEI TSLAGAQLLF 360
  361 DIVSMMVKYP LVKEADLSRY MPIHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.221849
Match:	1gq6A
Description:	Proclavaminate amidino hydrolase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits