YRC Public Data Repository - Protein Structure Prediction

Protein:	fta4
Organism:	Schizosaccharomyces pombe
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fta4.

Description	E-value	Query Range	Subject Range
gi\|42547062, gi\|... - gi\|46111489\|ref\|XP_382802.1\| hypothetical protein FG02626.1 [Gibberella zeae PH-1], gi\|42547062\|gb\|E...	306.0	[0..3]	[219..10]
gi\|38111531, gi\|... - gi\|39945896\|ref\|XP_362485.1\| hypothetical protein MG08068.4 [Magnaporthe grisea 70-15], gb\|EAA57099....	248.0	[0..3]	[227..9]
gi\|32412035, gi\|... - gi\|32412035\|ref\|XP_326498.1\| predicted protein [Neurospora crassa], gi\|28950076\|emb\|CAD70829.1\| cons... gi\|85103913 - gi\|85103913\|ref\|XP_961617.1\| hypothetical protein NCU11272 [Neurospora crassa OR74A]	242.0	[0..3]	[200..12]
gi\|88184973, gi\|... - gi\|88184973\|gb\|EAQ92441.1\| hypothetical protein CHGG_00676 [Chaetomium globosum CBS 148.51], gi\|1161...	172.0	[0..3]	[206..9]
gi\|115491875, gi... - gi\|115491875\|ref\|XP_001210565.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	168.0	[0..3]	[201..7]
gi\|40746423, gi\|... - gi\|67517620\|ref\|XP_658615.1\| hypothetical protein AN1011.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	152.0	[0..3]	[131..37]
gi\|90300794, gi\|... - gi\|90300794\|gb\|EAS30425.1\| predicted protein [Coccidioides immitis RS], gi\|119181607\|ref\|XP_00124200...	149.0	[0..1]	[206..5]
gi\|111060830 - gi\|111060830\|gb\|EAT81950.1\| predicted protein [Phaeosphaeria nodorum SN15]	106.0	[0..3]	[200..8]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYEHKKSF MERQIRLLNR PMRPPKDWKL PLKSGQLSES VVETVFQRLQ LRIQKHAKLN  60
   61 YSHQATQHVA AQIRKLYEQN SAIEDITFLN PLFYGEIDLS NLDSVKSLPH PWPFQKESRP 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKDEEQEKF NRLTGELLGL LTTLSELEQE RSELEQIEKM LEPFEDGPSS IHTNMWKKNP  60
   61 ELISTLNSTN TMVAKINSLL RGVSFPSLNN DNQEASLEDE IRSQLFEKTI SDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.886	a.7.7	BAG domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits