YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB8E5.09
Organism:	Schizosaccharomyces pombe
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB8E5.09.

Description	E-value	Query Range	Subject Range
gi\|74226963 - gi\|74226963\|dbj\|BAE27123.1\| unnamed protein product [Mus musculus]	251.0	[0..2]	[456..1]
gi\|60652563, gi\|... - gi\|60652563\|gb\|AAX28976.1\| RuvB-like 1 [synthetic construct], gi\|30584409\|gb\|AAP36457.1\| Homo sapien...	251.0	[0..2]	[456..1]
gi\|62896685 - gi\|62896685\|dbj\|BAD96283.1\| TATA binding protein interacting protein 49 kDa variant [Homo sapiens]	251.0	[0..2]	[456..1]
RUVB1_XENLA - RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1	249.0	[0..2]	[456..1]
gi\|57524964, gi\|... - gi\|57524964\|ref\|NP_001006138.1\| RuvB-like 1 [Gallus gallus], gi\|53136380\|emb\|CAG32519.1\| hypothetica...	249.0	[0..2]	[456..1]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQISEVKGN GRDNRITTHS HIKGLGLKED GTCESVGGGF IGQEKAREAC GIITDLIKSK  60
   61 KFGGKGVLFA GGAGTGKTAL ALAIAQELGP KVPFCPMVGS EVYSSEIKKT EALMENFRRA 120
  121 IGLRVKETKE VYEGEVTEMV PEEAENPLGG YGKTISHVLL GLKTHKGTKQ LKLDPSIYES 180
  181 LQREQVSTGD VIYIEANTGA VKRVGRSDAY ATEFDLEAEE YVPMPKGEVH KRKEIVQDVT 240
  241 LHDLDIANAR PQGGQDIMSM MGQLMKPKKT EITDKLRGEI NKVVNKYIEQ GIAELIPGVL 300
  301 FIDEVHMLDI ECFTYLNQAL ESTISPIVIF ASNRGICTIR GTEDIQAPHG IPTDLLDRLL 360
  361 IVRTLPYSES EIRSILQIRA KVENIILTDE CLDKLAQEGS RTSLRYVIQL LTPVSIIASL 420
  421 HGNKEIGVQD IEECNDLFLD ARRSAQVVKS SSGFLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	2c9oA
Description:	No description for 2c9oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits