YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4F10.19c
Organism:	Schizosaccharomyces pombe
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4F10.19c.

Description	E-value	Query Range	Subject Range
gi\|218433 - gi\|218433\|dbj\|BAA01878.1\| HIT1 [Saccharomyces cerevisiae]	146.0	[0..3]	[154..7]
gi\|238881571 - gi\|238881571\|gb\|EEQ45209.1\| conserved hypothetical protein [Candida albicans WO-1] orf19.10238 - HIT1 CGDID:CAL0004198 Assembly 19, Contig19-20158 (109339, 108902) CDS, reverse complemented, transl... gi\|68471390, gi\|... - gi\|68471390\|ref\|XP_720243.1\| hypothetical protein CaO19.10238 [Candida albicans SC5314], gi\|46442102...	136.0	[0..3]	[151..4]
gi\|44984931, gi\|... - gi\|45198902\|ref\|NP_985931.1\| AFR384Wp [Ashbya gossypii ATCC 10895], gi\|44984931\|gb\|AAS53755.1\| AFR38... gi\|44984931 - gi\|44984931\|gb\|AAS53755.1\| AFR384Wp [Ashbya gossypii ATCC 10895]	134.0	[0..3]	[154..2]
gi\|29124639, gi\|... - gi\|41053670\|ref\|NP_956567.1\| thyroid hormone receptor interactor 3 [Danio rerio], gi\|29124639\|gb\|AAH...	128.0	[0..1]	[146..1]
tag-143 - status:Confirmed UniProt:Q23644 protein_id:CAA94857.2	125.0	[0..3]	[123..83]
gi\|46228585 - gi\|46228585\|gb\|EAK89455.1\| hypothetical protein cgd8_2690 [Cryptosporidium parvum Iowa II] gi\|66359982 - gi\|66359982\|ref\|XP_627169.1\| hypothetical protein [Cryptosporidium parvum Iowa II]	124.0	[0..4]	[154..18]
gi\|109114607 - gi\|109114607\|ref\|XP_001111068.1\| PREDICTED: similar to thyroid hormone receptor interactor 3 isoform...	120.0	[0..4]	[146..11]
gi\|157763414 - gi\|157763414\|ref\|XP_001674049.1\| Hypothetical protein CBG09548 [Caenorhabditis briggsae AF16] gi\|39593288, gi\|... - gi\|39593288\|emb\|CAE64758.1\| Hypothetical protein CBG09548 [Caenorhabditis briggsae], gi\|187031758\|em...	119.0	[0..3]	[123..81]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCSICNES EIKYKCPKCS FPYCSLPCWK IHQSQCETVN DNNTTTFKGV KEPLNPPEPS  60
   61 PNVIYVNGRI PSLAEEALPS ESLLESIVED PSIKNLIESN AELLHIMKEL VNLDREEEGS 120
  121 VPLKTLDAIQ QQRLHNPSFE KLASMILEKY YAQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits