YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2E1P3.05c
Organism:	Schizosaccharomyces pombe
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2E1P3.05c.

Description	E-value	Query Range	Subject Range
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	182.0	[0..3]	[196..1679]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	180.0	[0..3]	[196..1672]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	174.0	[0..6]	[194..1506]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	169.0	[0..2]	[195..1507]
gi\|134089267, gi... - gi\|50257749\|gb\|EAL20450.1\| hypothetical protein CNBE3710 [Cryptococcus neoformans var. neoformans B-... gi\|58267574, gi\|... - gi\|58267574\|ref\|XP_570943.1\| DNA-directed RNA polymerase ii largest subunit [Cryptococcus neoformans...	169.0	[0..2]	[196..1550]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	166.0	[0..49]	[195..1408]
gi\|159131590 - gi\|159131590\|gb\|EDP56703.1\| DNA-dependent RNA polymerase II largest subunit, putative [Aspergillus f... gi\|70996164, gi\|... - gi\|70996164\|ref\|XP_752837.1\| DNA-dependent RNA polymerase II largest subunit [Aspergillus fumigatus ...	160.0	[0..9]	[196..1524]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	159.0	[0..9]	[196..1524]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	159.0	[0..9]	[196..1524]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	157.0	[0..2]	[196..1057]

Back

Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTQSLFLTV LTLALSLVSK TSASQCSPRY GTCGGIYYDG PTCCVVGSSC IYSNPWYSQC  60
   61 IPVDYTGPCA KLYQQCGGIN YNGPTCCEPG SECIYNGPYY SQCIPVDIDP SSSSSSAASS 120
  121 TTSTTSSSSL VSSTTLTSSS PSAVSSTTSI PSISSTISSS VSTSSFTSLS SSGFSTVLSS 180
  181 TNTTSALPSS GWNVTGY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits