YRC Public Data Repository - Protein Structure Prediction

Protein:	rsm25
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsm25.

Description	E-value	Query Range	Subject Range
RT25_CANAL - 37S ribosomal protein S25, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RSM2... RT25_CANAL - 37S ribosomal protein S25, mitochondrial OS=Candida albicans GN=RSM25 PE=3 SV=1	298.0	[0..5]	[211..6]
gi\|28917517, gi\|... - gi\|32403976\|ref\|XP_322601.1\| hypothetical protein [Neurospora crassa], gi\|28917517\|gb\|EAA27216.1\| co... gi\|85079951 - gi\|85079951\|ref\|XP_956452.1\| hypothetical protein NCU03343 [Neurospora crassa OR74A]	284.0	[0..4]	[201..7]
RT25_YEAS7 - 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=RSM25 PE=3 S... RT25_YEAST - 37S ribosomal protein S25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190406304 - gi\|190406304\|gb\|EDV09571.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae... gi\|207344364 - gi\|207344364\|gb\|EDZ71533.1\| YIL093Cp-like protein [Saccharomyces cerevisiae AWRI1631] RSM25 - Mitochondrial ribosomal protein of the small subunit	280.0	[0..5]	[212..6]
RT25_NEUCR - 37S ribosomal protein S25, mitochondrial OS=Neurospora crassa GN=rsm-25 PE=3 SV=1 RT25_NEUCR - 37S ribosomal protein S25, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS ...	276.0	[0..4]	[201..7]
RT25_MAGGR - 37S ribosomal protein S25, mitochondrial OS=Magnaporthe grisea GN=RSM25 PE=3 SV=1 RT25_MAGO7 - 37S ribosomal protein S25, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC ...	270.0	[0..27]	[205..44]
RT25_EMENI - 37S ribosomal protein S25, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 1... RT25_EMENI - 37S ribosomal protein S25, mitochondrial OS=Emericella nidulans GN=rsm25 PE=3 SV=1	255.0	[0..22]	[202..39]
gi\|42545511, gi\|... - gi\|46109542\|ref\|XP_381829.1\| hypothetical protein FG01653.1 [Gibberella zeae PH-1], gi\|42545511\|gb\|E...	251.0	[0..6]	[202..8]
gi\|71005246, gi\|... - gi\|71005246\|ref\|XP_757289.1\| hypothetical protein UM01142.1 [Ustilago maydis 521], ref\|XP_398757.1\| ...	245.0	[0..1]	[188..1]
RT25_KLULA - 37S ribosomal protein S25, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM ... RT25_KLULA - 37S ribosomal protein S25, mitochondrial OS=Kluyveromyces lactis GN=RSM25 PE=3 SV=1	232.0	[0..6]	[204..7]
RT25_CHAGB - 37S ribosomal protein S25, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM... RT25_CHAGB - 37S ribosomal protein S25, mitochondrial OS=Chaetomium globosum GN=RSM25 PE=3 SV=1	228.0	[0..3]	[214..6]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKFNANGLL RSFAAEMKKP WTAESLWYET VAKHPPTFQY ARRIVPLYDP NKVKSRGKRL  60
   61 RKSMYQPQEI QWPEDKLRKR FYRDHPWELA RPQIIAENDG NDQQYCDWSH MDQPRKALSG 120
  121 ESVVQRTLWL IENSNMPVEN AYDQARKEFY HLRAEQEIQQ RVAHDQAQAL GAVFTKSDLE 180
  181 LGYEMDQNAL NSWFDNASQY AEANRTKFTD PSVDISKTTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits