YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC18A7.02c
Organism:	Schizosaccharomyces pombe
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC18A7.02c.

Description	E-value	Query Range	Subject Range
gi\|85079712 - gi\|85079712\|ref\|XP_956405.1\| hypothetical protein NCU00182 [Neurospora crassa OR74A] gi\|32403310, gi\|... - gi\|32403310\|ref\|XP_322268.1\| hypothetical protein [Neurospora crassa], gi\|28917468\|gb\|EAA27169.1\| hy...	421.0	[0..3]	[451..10]
gi\|46122053, gi\|... - gi\|46122053\|ref\|XP_385580.1\| hypothetical protein FG05404.1 [Gibberella zeae PH-1], gi\|42550994\|gb\|E...	401.0	[0..3]	[451..7]
gi\|39977031, gi\|... - gi\|39977031\|ref\|XP_369903.1\| hypothetical protein MG06418.4 [Magnaporthe grisea 70-15], gb\|EAA56447....	397.0	[0..16]	[451..20]
gi\|42568843 - gi\|42568843\|ref\|NP_178217.3\| unknown protein [Arabidopsis thaliana]	395.0	[0..3]	[440..12]
PTM1_YEAST - Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTM1 PE=1 SV=2 PTM1 - Protein of unknown function, copurifies with late Golgi vesicles containing the v-SNARE Tlg2p gi\|207343479 - gi\|207343479\|gb\|EDZ70928.1\| YKL039Wp-like protein [Saccharomyces cerevisiae AWRI1631]	381.0	[0..2]	[455..11]
gi\|90298498, gi\|... - gi\|90298498\|gb\|EAS28129.1\| hypothetical protein CIMG_09333 [Coccidioides immitis RS], gi\|119174742\|r...	374.0	[0..4]	[440..5]
gi\|114195292, gi... - gi\|115387405\|ref\|XP_001211208.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	371.0	[0..5]	[450..7]
gi\|83772819 - gi\|83772819\|dbj\|BAE62947.1\| unnamed protein product [Aspergillus oryzae] gi\|169779231 - gi\|169779231\|ref\|XP_001824080.1\| hypothetical protein [Aspergillus oryzae RIB40]	370.0	[0..8]	[450..10]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLISLLWS IFFSIVYSEK TLLNFKHYEL CNGIYSKSES GGSLNPAIYV NWTEPWGQED  60
   61 EVEVLIFNWK EIRKLGAFRS DDQFTYICDY DAVYTDHLCE ADQLGLYLWN STSAKSIRSY 120
  121 IIPTNADPQN IIYEISQSGY YCIWSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKKMLPYQAL VNWQNAYGGL PASQFPRMPI SGGITIAYSV ILALWMFFRF QYKHSIVTVQ  60
   61 KAIMFLLIFS CAQQAVTSIV LDTENLRNRG NFTWLGETLV SILFACQLVL DLALLLILSW 120
  121 GYTRYSTNMR DRLFTEAKIP LIICFFALFV VRFFAITIQS IHLGLWFCFF FLTACISALY 180
  181 ILFGAFVALP STLRALVEQR YYTLHSIYKI FRIMVLCGVV TIFSFSLVAL IFCSNTNNNS 240
  241 TNKLWKIRWY FLDGWIDGVH LTYLITLSSL WRPSQENPDL DPTGLSYPVL DPRLEEELDL 300
  301 LEEDIRADKS K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.96
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits