YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP27G11.02
Organism:	Schizosaccharomyces pombe
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP27G11.02.

Description	E-value	Query Range	Subject Range
gi\|115374809, gi... - gi\|115374809\|ref\|ZP_01462084.1\| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1], gi...	188.0	[0..9]	[347..168]
gi\|72396054, gi\|... - gi\|73668892\|ref\|YP_304907.1\| hypothetical protein Mbar_A1366 [Methanosarcina barkeri str. Fusaro], g...	182.0	[0..46]	[356..492]
gi\|113476999, gi... - gi\|113476999\|ref\|YP_723060.1\| peptidase-like [Trichodesmium erythraeum IMS101], gi\|110168047\|gb\|ABG5...	181.0	[0..8]	[347..188]
gi\|49092446, gi\|... - gi\|67526179\|ref\|XP_661151.1\| hypothetical protein AN3547.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	176.0	[0..3]	[354..891]
gi\|25534507 - pir\|\|AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229915, gi\|... - gi\|17229915\|ref\|NP_486463.1\| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi\|17131515\|dbj\|BAB...	176.0	[0..21]	[356..277]
gi\|186682342, gi... - gi\|23125801\|ref\|ZP_00107719.1\| COG0457: FOG: TPR repeat [Nostoc punctiforme PCC 73102], gi\|186682342...	175.0	[0..8]	[349..136]
gi\|116751398, gi... - gi\|71545433\|ref\|ZP_00666364.1\| TPR repeat:TPR-related region [Syntrophobacter fumaroxidans MPOB], gi...	174.0	[0..41]	[354..57]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMQWIWKSR RSLQNVFIRR SSQYHKPFWR RPLPATLLGC AVLGVAAVYF AKPSPIDENY  60
   61 PRSVAKYLHE ALYRQKGENN HDFQDAWKAY QSAIKQAESE KMDMESPPVQ GIRLQMANLL 120
  121 ASAGALHKAW SMYWDILERT SKLPDFLEQR VLIASKLIEL SEPLGLQKDA TKAADLIVKA 180
  181 LLSKQFNGDD EQKSRLFEQS ATLYFQAGTP SYAVPLYHEA LNLTMANPSC HGLILMNNLA 240
  241 TSLLAQTETV DKKHHETLMK QSQSWSQKAV DSYYFAYPKD RNQECHAGCA AAFYTLGQIA 300
  301 ERQGNIDLAL KHYKNSEALR KDDPYNDGSM LSHIAIDRLD KDAFIKKLDK SSSPTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.911909606569877	bayes_pls_golite062009
protein binding	0.420010637453541	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: