YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl38
Organism:	Schizosaccharomyces pombe
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl38.

Description	E-value	Query Range	Subject Range
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	189.0	[0..1]	[126..1]
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	187.0	[0..1]	[126..61]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	186.0	[0..1]	[126..58]
gi\|76809421, gi\|... - gi\|76809421\|ref\|YP_335130.1\| 50S ribosomal protein L14 [Burkholderia pseudomallei 1710b], gi\|7657887...	184.0	[0..1]	[126..41]
RL14_THEEB - 50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1 RL14_SYNEL - 50S ribosomal protein L14 OS=Synechococcus elongatus GN=rplN PE=3 SV=1	183.0	[0..1]	[126..1]
RL14_FRASN - 50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1	183.0	[0..1]	[126..1]
gi\|241907011, gi... - gi\|241907011\|ref\|ZP_04791592.1\| ribosomal protein L14 [Desulfovibrio vulgaris RCH1], gi\|241880824\|gb... RL14_DESVH - 50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)... RL14_DESVV - 50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1	183.0	[0..1]	[126..1]
RL14_FRASC - 50S ribosomal protein L14 OS=Frankia sp. (strain CcI3) GN=rplN PE=3 SV=1 RL14_FRAAA - 50S ribosomal protein L14 OS=Frankia alni (strain ACN14a) GN=rplN PE=3 SV=1	182.0	[0..1]	[126..1]
RL14_SALRD - 50S ribosomal protein L14 OS=Salinibacter ruber (strain DSM 13855 / M31) GN=rplN PE=3 SV=1	182.0	[0..1]	[126..1]
gi\|25295213 - pir\|\|AF2331 50S ribosomal protein L14 [imported] - Nostoc sp. (strain PCC 7120) RL14_NOSS1 - 50S ribosomal protein L14 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplN PE=3 SV=1 RL14_ANAVT - 50S ribosomal protein L14 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplN PE=3 SV=1	182.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLKGILKV IDNSGATLAE CIRVVRAGKF ASLGDEVVVV VKKARSGSSV TAANKVKRGD  60
   61 IHHAIIVRTK SPVRRPDGRY VRFDDNACVL VNKECEPLGT RILSVVANEL RTKHHTKIAS 120
  121 LAPRTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	2j01O
Description:	No description for 2j01O was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits