YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11E3.14
Organism:	Schizosaccharomyces pombe
Length:	588 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11E3.14.

Description	E-value	Query Range	Subject Range
gi\|114623907 - gi\|114623907\|ref\|XP_528545.2\| PREDICTED: hypothetical protein [Pan troglodytes]	639.0	[0..32]	[582..296]
gi\|62649410, gi\|... - gi\|62649410\|ref\|XP_216483.3\| PREDICTED: similar to C32D5.6 [Rattus norvegicus], gi\|109476899\|ref\|XP_...	629.0	[0..27]	[586..17]
gi\|22382123, gi\|... - gi\|26339486\|dbj\|BAC33414.1\| unnamed protein product [Mus musculus], gi\|225543130\|ref\|NP_700441.2\| te...	627.0	[0..27]	[586..17]
gi\|73971670 - gi\|73971670\|ref\|XP_531937.2\| PREDICTED: similar to C32D5.6 [Canis familiaris]	621.0	[0..34]	[582..63]
gi\|109004761 - gi\|109004761\|ref\|XP_001111084.1\| PREDICTED: similar to C32D5.6 isoform 1 [Macaca mulatta]	619.0	[0..26]	[586..18]

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Predicted Domain #1

Region A:
Residues: [1-588]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNIKNHLRL PIIGKREPEE QPDPIDHDLH VQRLRELLYG LDLMLDDDAQ GVKSAFSDDT  60
   61 VESAVGRSGS AFYNAILGLE PKAIEEATEA LYHAEQVTEE RKKHFEHHDR PIGSYPAGME 120
  121 LQLCLSDIYL MQSALGFVSD SIVDSMKAAY RIRKTFLSFS KMMEHVRDVQ HKKETGEIKS 180
  181 LSPNATFIDE FIESGVITGY GVLTFLVSMF PPSLSRILSL FSFHGVRKES LELLWRASKY 240
  241 PNIQGAIALL CLYAFNAMIQ SLGSIPPSNY DQELEHCLQA VKDIRKRYSK GALWAVMEAK 300
  301 IYFLTGESQM ALEMEELSID SSMEQIIAMK GFDTAMLYVG MRKFKQAADA IIELEDLNSW 360
  361 SHAFYRYFAG CCLLQHGKEI LGSGGSEEEA KASIDHGIEY LKNAPTLVQK KKKRRTLPVE 420
  421 AYLIRKVQKW EDRAEKLNIS IADAMDVPPY AELIYIFVIC SLKDPKEAEA LRADLETCKC 480
  481 SEEDEAGLKE FLLGVIDRHL KEYDSCRVRM EHVLQLDQGY LSRDNRELWI LPFAYYELAA 540
  541 LYWDMHGMAA EKEVNHYLKK AQEFNDYDLQ NRLSMLAQAA TQTLQSEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.72
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits