YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17G6.15c
Organism:	Schizosaccharomyces pombe
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17G6.15c.

Description	E-value	Query Range	Subject Range
SFXN1 - sideroflexin 1 gi\|117646506 - gi\|117646506\|emb\|CAL38720.1\| hypothetical protein [synthetic construct]	483.0	[0..17]	[325..19]
gi\|109079814 - gi\|109079814\|ref\|XP_001082798.1\| PREDICTED: sideroflexin 1 [Macaca mulatta]	482.0	[0..17]	[325..19]
gi\|114603452, gi... - gi\|114603460\|ref\|XP_001156606.1\| PREDICTED: sideroflexin 1 isoform 5 [Pan troglodytes], gi\|114603458...	482.0	[0..17]	[325..19]
gi\|213624326, gi... - gi\|89267480\|emb\|CAJ83464.1\| Sideroflexin 1 [Xenopus tropicalis], gi\|62858971\|ref\|NP_001016244.1\| sid...	481.0	[0..17]	[325..19]
gi\|2144101, gi\|5... - gi\|545998\|gb\|AAB30258.1\| tricarboxylate carrier [Rattus sp.], gi\|2144101\|pir\|\|I55210 tricarboxylate ...	478.0	[0..17]	[325..54]
gi\|62663266, gi\|... - gi\|62663266\|ref\|XP_573990.1\| PREDICTED: sideroflexin 1 (predicted) [Rattus norvegicus], gi\|58865994\|...	478.0	[0..17]	[325..19]
SFXN1_MOUSE - Sideroflexin-1 OS=Mus musculus GN=Sfxn1 PE=1 SV=3	476.0	[0..17]	[325..19]
SFXN1_BOVIN - Sideroflexin-1 OS=Bos taurus GN=SFXN1 PE=2 SV=3	474.0	[0..17]	[325..19]
gi\|114107861, gi... - gi\|148229593\|ref\|NP_001090349.1\| sideroflexin 1 (35.5 kD) (XM278) [Xenopus laevis], gi\|114107861\|gb\|...	474.0	[0..17]	[325..19]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCPPIGDVF VYVILLFVFM LMRQHAMDIT DPRTLLSTSQ DLNSAVKTLE DYGAGKIAQL  60
   61 DETVWHAKKI VDSTLHPDTK EPVFLPFRMS CFVLTNLVVT AGMLQPNLGT AGTVFWQWMN 120
  121 QSVNVAFNSA NANKSTQL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLPQMTKSYI YAVSASCGVA IGLNKIVPRM NFLSSSSKAV LGRLTPFAAV ASAGVLNVFL  60
   61 MRGEELRQGI DVFDKEGESL GKSKKAAFY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [228-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVGETALSRV INASPIMVIP PLVLMRLQKQ NWLRTRPKLT IPVNLGLITL TSLIALPLAI  60
   61 GVFPAREKIS PFKLEPQFHH LKDKSDQPIV EVEFNRGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits