YRC Public Data Repository - Protein Structure Prediction

Protein:	sec65
Organism:	Schizosaccharomyces pombe
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec65.

Description	E-value	Query Range	Subject Range
gi\|40746029, gi\|... - gi\|67516721\|ref\|XP_658246.1\| hypothetical protein AN0642.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	241.0	[0..5]	[178..61]
gi\|42551594, gi\|... - gi\|46121549\|ref\|XP_385329.1\| hypothetical protein FG05153.1 [Gibberella zeae PH-1], gi\|42551594\|gb\|E...	208.0	[0..5]	[167..79]
gi\|66850685, gi\|... - gi\|70996590\|ref\|XP_753050.1\| signal recognition particle 19 kDa protein [Aspergillus fumigatus Af293... gi\|159131786 - gi\|159131786\|gb\|EDP56899.1\| signal recognition particle 19 kDa protein homolog [Aspergillus fumigatu...	200.0	[0..5]	[182..59]
gi\|111069111 - gi\|111069111\|gb\|EAT90231.1\| hypothetical protein SNOG_02019 [Phaeosphaeria nodorum SN15]	200.0	[0..5]	[158..100]
gi\|39943900, gi\|... - gi\|39943900\|ref\|XP_361487.1\| hypothetical protein MGG_03961 [Magnaporthe grisea 70-15], gb\|EAA50202....	200.0	[0..5]	[150..75]
gi\|28916785, gi\|... - gi\|32404260\|ref\|XP_322743.1\| hypothetical protein [Neurospora crassa], gi\|28916785\|gb\|EAA26541.1\| co... gi\|85075489 - gi\|85075489\|ref\|XP_955777.1\| hypothetical protein NCU03485 [Neurospora crassa OR74A]	199.0	[0..5]	[148..125]
gi\|114192482, gi... - gi\|115397399\|ref\|XP_001214291.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	197.0	[0..5]	[184..59]
SEC65_ASHGO, SC6... - Signal recognition particle SEC65 subunit OS=Ashbya gossypii GN=SEC65 PE=3 SV=1, (Q756H7) Signal rec... SEC65_ASHGO - Signal recognition particle SEC65 subunit OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC ...	192.0	[0..5]	[142..92]
SEC65_KLULA - Signal recognition particle SEC65 subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM... SC65_KLULA, SEC6... - Signal recognition particle SEC65 subunit OS=Kluyveromyces lactis GN=SEC65 PE=3 SV=2, (O13475) Signa...	191.0	[0..5]	[143..93]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIILYPIY FDKSRPRRFR CVPKDKAILN PLAKNIADVV RDLGYKCKLE PLKTHPADWV  60
   61 NPGRVEMVLP EKIQKKYVIN EIAKVLLLRP TVKTDPLSLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1mfqB
Description:	SRP19
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [101-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQNVPARLPE NPPAYPKGVL GNTILPLHSP ALSGGGISEN MFQEMMQEMQ KQPGLAGGMN  60
   61 PMAALAGMGG PAPPMPTPQA SSSQRKQKSI EPEYDLDLE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits