YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC20H4.05c
Organism:	Schizosaccharomyces pombe
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20H4.05c.

Description	E-value	Query Range	Subject Range
gi\|19747447, gi\|... - gi\|19747447\|gb\|AAL96979.1\| putative L-ribulose 5-phosphate [Streptococcus pyogenes MGAS8232], gi\|197...	204.0	[0..13]	[217..22]
gi\|15674384, gi\|... - gi\|15674384\|ref\|NP_268558.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes M1 GAS], gi\|... gi\|71909967, gi\|... - gi\|71909967\|ref\|YP_281517.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS5005], g...	203.0	[0..13]	[217..1]
gi\|94991658, gi\|... - gi\|94991658\|ref\|YP_599757.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS2096], g...	203.0	[0..13]	[217..9]
gi\|50913545, gi\|... - gi\|50913545\|ref\|YP_059517.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS10394], ... gi\|94987786, gi\|... - gi\|94987786\|ref\|YP_595887.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS9429], g...	203.0	[0..13]	[217..9]
gi\|94543172, gi\|... - gi\|94989664\|ref\|YP_597764.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS10270], ... gi\|94993555, gi\|... - gi\|94993555\|ref\|YP_601653.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS10750], ...	203.0	[0..13]	[217..9]
gi\|71801912, gi\|... - gi\|71902817\|ref\|YP_279620.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS6180], g... gi\|28895055, gi\|... - gi\|28895055\|ref\|NP_801405.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes SSI-1], gi\|2... gi\|21909676, gi\|... - gi\|21909676\|ref\|NP_663944.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus pyogenes MGAS315], gi...	203.0	[0..13]	[217..1]
gi\|77412024, gi\|... - gi\|77412024\|ref\|ZP_00788352.1\| carbohydrate isomerase, AraD/FucA family [Streptococcus agalactiae CJ... gi\|77406625, gi\|... - gi\|77406625\|ref\|ZP_00783670.1\| carbohydrate isomerase, AraD/FucA family [Streptococcus agalactiae H3... gi\|76563117, gi\|... - gi\|76788060\|ref\|YP_330427.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus agalactiae A909], gi\|...	195.0	[0..13]	[217..1]
gi\|77409060, gi\|... - gi\|77409060\|ref\|ZP_00785777.1\| carbohydrate isomerase, AraD/FucA family [Streptococcus agalactiae CO...	195.0	[0..13]	[217..1]
gi\|68195862, gi\|... - gi\|69245332\|ref\|ZP_00603376.1\| Class II aldolase/adducin, N-terminal [Enterococcus faecium DO], gi\|6... gi\|48825725 - ref\|ZP_00286965.1\| COG0235: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [E...	192.0	[0..17]	[217..2]
gi\|77413912, gi\|... - gi\|77413912\|ref\|ZP_00790088.1\| carbohydrate isomerase, AraD/FucA family [Streptococcus agalactiae 51... gi\|76798370, gi\|... - gi\|76798370\|ref\|ZP_00780613.1\| L-ribulose-phosphate 4-epimerase [Streptococcus agalactiae 18RS21], g... gi\|24413431, gi\|... - gi\|25011890\|ref\|NP_736285.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus agalactiae NEM316], g... gi\|22534849, gi\|... - gi\|22537949\|ref\|NP_688800.1\| L-ribulose-5-phosphate 4-epimerase [Streptococcus agalactiae 2603V/R], ...	192.0	[0..13]	[217..1]

Back

Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDFLKKDLG CLRSGDLKKC GELICEICRD LYTSGWVTGT GDAIVIAPSG VQKERMELHH  60
   61 LFVMSLITRE YMRMPALRLK PSQCTPLFLA VYTSLRDAYA CIHTHSQEAI LLSTLFADSD 120
  121 HFSATGFEVL SYIPKGSKNN GFHKPTDKIK IPFINNTAHE SDLHDSLQEA INLYPDTCAV 180
  181 IVRDHGIYCW GDTWQDTKMN TEAVEFLFQA YLRRRRLQKP E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1jdiA
Description:	L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.89539096965643	bayes_pls_golite062009
catalytic activity	1.58067730905989	bayes_pls_golite062009
protein binding	0.401574215469404	bayes_pls_golite062009
lyase activity	0.114082266751758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: