YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP27G11.06c
Organism:	Schizosaccharomyces pombe
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP27G11.06c.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	190.0	[0..3]	[157..190]
gi\|38109895, gi\|... - gi\|39951407\|ref\|XP_363420.1\| hypothetical protein MG01346.4 [Magnaporthe grisea 70-15], gb\|EAA55695....	183.0	[0..1]	[156..1]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	181.0	[0..3]	[144..48]
gi\|27924367 - gi\|27924367\|gb\|AAH45095.1\| Ap1s1 protein [Xenopus laevis]	179.0	[0..3]	[159..22]
gi\|108711413, gi... - gi\|34897116\|ref\|NP_909904.1\| putative clathrin assembly protein [Oryza sativa], gi\|14718316\|gb\|AAK72... gi\|17149112 - gi\|17149112\|gb\|AAL35902.1\|AF443602_1 clathrin assembly protein AP19-like protein [Oryza sativa]	177.0	[0..1]	[161..21]
gi\|109101341 - gi\|109101341\|ref\|XP_001098858.1\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3...	175.0	[0..3]	[145..76]
gi\|76610718 - gi\|76610718\|ref\|XP_612669.2\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 iso...	174.0	[0..3]	[145..38]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKFFLLVS RQGKVRLAKW FNTLSIKERA KIIRDVSSLV ITRKPKMCNF VEYKGEKIVY  60
   61 RRYASLFFVC GIEQDDNELI ILEVIHKFVE CLDKYFGNVC ELDLIFNFEK AYYVMEELLL 120
  121 AGELQESSKT NVLSAVLAGD AESEADAQQD SLQKLVGSVK KR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1w63Q
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits