YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC10F6.03c
Organism:	Schizosaccharomyces pombe
Length:	600 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC10F6.03c.

Description	E-value	Query Range	Subject Range
PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus GN=pyrG PE=3 SV=1 PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus (strain HTA426) GN=pyrG PE=3 SV=1	773.0	[0..2]	[555..3]
PYRG_BACLD - CTP synthase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9...	762.0	[0..2]	[559..3]
gi\|146297554, gi... - gi\|82499007\|ref\|ZP_00884460.1\| CTP synthase [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|8240...	761.0	[0..1]	[560..5]
gi\|134301012, gi... - gi\|88945575\|ref\|ZP_01148743.1\| CTP synthase [Desulfotomaculum reducens MI-1], gi\|88924801\|gb\|EAR4379...	760.0	[0..2]	[558..3]
PYRG_CARHZ - CTP synthase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=pyrG ...	759.0	[0..2]	[558..3]
PYRG_BACHD - CTP synthase OS=Bacillus halodurans GN=pyrG PE=3 SV=1 PYRG_BACHD - CTP synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)...	757.0	[0..2]	[556..4]
PYRG_BACCN - CTP synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=pyrG P...	756.0	[0..2]	[560..3]
PYRG_BACSK - CTP synthase OS=Bacillus clausii (strain KSM-K16) GN=pyrG PE=3 SV=1	755.0	[0..2]	[557..4]
PYRG_THETN - CTP synthase OS=Thermoanaerobacter tengcongensis GN=pyrG PE=3 SV=1 PYRG_CALS4 - CTP synthase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / N...	753.0	[0..2]	[557..3]
gi\|221325199 - gi\|221325199\|ref\|ZP_03606493.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221320915 - gi\|221320915\|ref\|ZP_03602209.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316004 - gi\|221316004\|ref\|ZP_03597809.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] PYRG_BACSU - CTP synthase OS=Bacillus subtilis GN=pyrG PE=3 SV=1 PYRG_BACSU - CTP synthase OS=Bacillus subtilis (strain 168) GN=pyrG PE=3 SV=1	753.0	[0..2]	[560..3]

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Predicted Domain #1

Region A:
Residues: [1-600]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVLVSGGV ISGIGKGVIA SSTGLLLKTL GLKVTSIKID PYMNIDAGTM SPLEHGEVFV  60
   61 LNDGGEVDLD LGNYERYLNV TLTHDNNITT GKVYSNVIQK ERRGDYLGKT VQIVPHVTNE 120
  121 IQDWVERVAR IPVDQSGEEP DVCIVELGGT VGDIESAAFV EAMRQFQFRV GHENFVSIHV 180
  181 SLVPVINGEQ KTKPTQQAIR DLRSLGITPD LIACRCKQPL EKSVIDKISL FCHVGPEQVL 240
  241 AVHDVSSTYH VPQLLEDKLL EYLKIRFALD KISVSRELAL AGENMWSSWK HLTQGYDHLF 300
  301 KKVTIVLVGK YTHLQDSYIS VIKALEHSAM RCGRKLDLQW VEASHLEAST NTSDPLSYHK 360
  361 AWHLVCSANG ILVPGGFGSR GVEGMIAAAK WARENNTPYL GICLGMQVAV IEFARSVCGI 420
  421 EGAFSEEFDK ECENNVVVYM PEIDKDKLGG TMRLGLRPTF FQPNSEWSKL RKLHKMVDEV 480
  481 LERHRHRYEI NPAFVSRLEQ GGISFIGKDE RGERMEIIEK RDHPYFVGVQ YHPEYLSKPL 540
  541 KPSPPIFGLV AASAGLLDEF IQSGEEVEWS NFSHFNAESA LADMNDSVEV TEEATVVTIS 600
  601

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits