YRC Public Data Repository - Protein Structure Prediction

Protein:	apg3
Organism:	Schizosaccharomyces pombe
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apg3.

Description	E-value	Query Range	Subject Range
gi\|109033028 - gi\|109033028\|ref\|XP_001104361.1\| PREDICTED: similar to Apg3p [Macaca mulatta]	404.0	[0..1]	[272..4]
gi\|114588462 - gi\|114588462\|ref\|XP_001155234.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|124000529, gi... - gi\|124000529\|gb\|ABM87773.1\| ATG3 autophagy related 3 homolog (S. cerevisiae) [synthetic construct], ... ATG3 - ATG3 autophagy related 3 homolog (S. cerevisiae)	403.0	[0..1]	[272..4]
ATG3_MOUSE - Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1	401.0	[0..1]	[272..4]
ATG3_BOVIN - Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1	401.0	[0..1]	[272..4]
ATG3_DANRE - Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1	401.0	[0..1]	[272..4]
ATG3_RAT - Ubiquitin-like-conjugating enzyme ATG3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1	399.0	[0..1]	[272..4]
gi\|74002684 - gi\|74002684\|ref\|XP_535740.2\| PREDICTED: similar to Apg3p [Canis familiaris]	399.0	[0..2]	[272..3]
gi\|50729624 - gi\|50729624\|ref\|XP_416588.1\| PREDICTED: hypothetical protein [Gallus gallus]	396.0	[0..1]	[272..4]
ATG3_XENLA - Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1	385.0	[0..1]	[272..4]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRLTSAFL NWREHITPAS KTSDFENTGM ISPEEFVLAG DYLVSKFPTW SWECGDRIRG  60
   61 FLPKDKQYLV TRHVFCVQRN INIGVNEEWV DIETDDTRNK DDDQDDDAIS SIHSDTSDIA 120
  121 SAERLKGQSK ELSDSGPLPL KDEEDDDQMV SPVIKEDEGR YYDLYIVYDK YYRTPRLFLR 180
  181 GWNAGGQLLT MKDIYEDVSG EHAGKTVTME PFPHYHSHNT MASVHPCKHA SVLLKLIKQH 240
  241 RERNDPIRVD QYMVLFLKFV STMLPYFEID YTIQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.221849
Match:	2dytA
Description:	No description for 2dytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits