YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3C7.02c
Organism:	Schizosaccharomyces pombe
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3C7.02c.

Description	E-value	Query Range	Subject Range
gi\|40740050, gi\|... - gi\|67526947\|ref\|XP_661535.1\| hypothetical protein AN3931.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	434.0	[0..27]	[374..25]
gi\|238484913, gi... - gi\|238484913\|ref\|XP_002373695.1\| cell wall integrity signaling protein Lsp1/Pil1, putative [Aspergil... gi\|171704179, gi... - gi\|171704179\|dbj\|BAG16417.1\| hypothetical protein [Aspergillus oryzae RIB40], gi\|169767974\|ref\|XP_00... gi\|83766313 - gi\|83766313\|dbj\|BAE56456.1\| unnamed protein product [Aspergillus oryzae]	431.0	[0..6]	[288..4]
gi\|45190277, gi\|... - gi\|45190277\|ref\|NP_984531.1\| AEL329Wp [Ashbya gossypii ATCC 10895], gi\|44983173\|gb\|AAS52355.1\| AEL32... gi\|44983173 - gi\|44983173\|gb\|AAS52355.1\| AEL329Wp [Ashbya gossypii ATCC 10895]	430.0	[0..6]	[269..4]
gi\|50423705, gi\|... - gi\|50423705\|ref\|XP_460437.1\| hypothetical protein DEHA0F01958g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656106 - gi\|49656106\|emb\|CAG88744.1\| DEHA2F01694p [Debaryomyces hansenii]	427.0	[0..6]	[309..4]
gi\|190406894 - gi\|190406894\|gb\|EDV10161.1\| sphingolipid long chain base-responsive protein PIL1 [Saccharomyces cere... PIL1 - Primary component of eisosomes, which are large immobile cell cortex structures associated with endo... PIL1_YEAST - Sphingolipid long chain base-responsive protein PIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|151943363 - gi\|151943363\|gb\|EDN61676.1\| phosphorylation inhibited by long chain bases [Saccharomyces cerevisiae ... gi\|207345156 - gi\|207345156\|gb\|EDZ72067.1\| YGR086Cp-like protein [Saccharomyces cerevisiae AWRI1631]	426.0	[0..6]	[269..4]
gi\|90299667, gi\|... - gi\|90299667\|gb\|EAS29298.1\| hypothetical protein CIMG_08044 [Coccidioides immitis RS], gi\|119178416\|r... gi\|240104855 - gi\|240104855\|gb\|EER23050.1\| sphingolipid long chain base-responsive protein PIL1, putative [Coccidio...	425.0	[0..6]	[289..4]
PIL1_SCHPO - Probable sphingolipid long chain base-responsive protein pil1 OS=Schizosaccharomyces pombe (strain 9... SPCC736.15 - protein kinase inhibitor	425.0	[0..6]	[313..5]
gi\|66848276, gi\|... - gi\|70991589\|ref\|XP_750643.1\| cell wall integrity signaling protein Lsp1/Pil1 [Aspergillus fumigatus ... gi\|159124203 - gi\|159124203\|gb\|EDP49321.1\| cell wall integrity signaling protein Lsp1, putative [Aspergillus fumiga...	425.0	[0..6]	[269..4]
gi\|49525798 - gi\|49525798\|emb\|CAG59417.1\| unnamed protein product [Candida glabrata] gi\|50288123, gi\|... - gi\|50288123\|ref\|XP_446490.1\| unnamed protein product [Candida glabrata], gi\|49525798\|emb\|CAG59417.1\|...	421.0	[0..6]	[269..4]

Back

Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTQPSYSIH TLRAPPKAKQ NQIPPSTTRR AVNVNKLGRQ FRYPSVGMFT PEMAKRLAAL  60
   61 VKMEKDLLRS YENVAMERKE CANQLSYWGE DCDDDISDIS DKLGVLLYEI GELEEHMVDR 120
  121 YDQYRVSLKT IRDIEASVQP TRVKKEKLLN SIYDVRSRDP ESPKLITMEQ ELVREEAACL 180
  181 VAEAQLTNIT RENFKRAFTL HIGTLLEHSE KVAILCGYAK KILDLLDDTP IVPGEPRPIY 240
  241 DGYNITRDYI VEAERELANW QNPFQTPEPL TDIDGLPSQS HYQTQFQASV VPRTDVINEP 300
  301 PRRYSHANGV TTSGTTHSYT STGSKRYSQM GTEDYQPSFQ PNILQSTQVV DNFEIGEEDD 360
  361 EEVGSQGVAE TSMPSTSAQP IAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1y1uA
Description:	Structure of unphosphorylated STAT5a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits