YRC Public Data Repository - Protein Structure Prediction

Protein:	cox17
Organism:	Schizosaccharomyces pombe
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cox17.

Description	E-value	Query Range	Subject Range
gi\|32187007 - gi\|32187007\|gb\|AAP73466.1\| cytochrome C oxidase copper chaperone [Schistosoma japonicum]	83.0	[0..1]	[68..1]
CX171_ARATH - Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1	77.0	[0..7]	[70..13]
gi\|44980009, gi\|... - gi\|45184663\|ref\|NP_982381.1\| AAL161Wp [Ashbya gossypii ATCC 10895], gi\|44980009\|gb\|AAS50205.1\| AAL16... gi\|44980009 - gi\|44980009\|gb\|AAS50205.1\| AAL161Wp [Ashbya gossypii ATCC 10895]	77.0	[0..8]	[70..2]
gi\|9022433, gi\|1... - gi\|9022433\|gb\|AAF82382.1\|AF280543_1 putative copper chaperone Cox17 [Chlamydomonas reinhardtii], gi\|...	76.0	[0..8]	[70..18]
gi\|42544323, gi\|... - gi\|46107346\|ref\|XP_380732.1\| hypothetical protein FG00556.1 [Gibberella zeae PH-1], gi\|42544323\|gb\|E...	75.0	[0..5]	[70..9]
gi\|49095078, gi\|... - gi\|67537386\|ref\|XP_662467.1\| hypothetical protein AN4863.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	75.0	[0..8]	[70..33]
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	74.0	[0..6]	[70..25]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	74.0	[0..7]	[70..27]
CE19849 - status:Confirmed UniProt:Q9TZ68 protein_id:AAC68797.1	74.0	[0..7]	[70..2]
gi\|66852479, gi\|... - gi\|71000295\|ref\|XP_754842.1\| cytochrome c oxidase copper chaperone Cox17 [Aspergillus fumigatus Af29...	73.0	[0..3]	[70..7]

Back

Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTEPSTA TKVSEPAPIA SEEKPKPCCA CPETKQARDA CMLQSSNGPI ECAKLIEAHK  60
   61 KCMAQYGYEV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.81
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits