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View Structure Prediction Details

Protein: SPBC1348.01, SPB...
Organism: Schizosaccharomyces pombe
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1348.01, SPB....

Description E-value Query
Range
Subject
Range
YM01_SCHPO - UPF0494 membrane protein C212.01c/CPT2R1.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
SPAC212.01c, SPB... - S. pombe specific DUF999 family protein 2, S. pombe specific DUF999 protein family 10
479.0 [0..1] [269..1]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPESLKKQ VEPPGYNELF MVEDVCNVDL EQGLDLCKPE KVNKQSQRSR QSRQSLFTNT  60
   61 IKPQKDKMNI KTNKIKEFLN DLFTEFSKFH NSYYPDGRIS TRSNFRWPLL IIWSIIIVFA 120
  121 VDKKFEVQKF LSIWINENRF YSEIWVPIAI YVCLLVLMLL SLI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 113.886057
Match: PF06198.2
Description: No description for PF06198.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFAEFAVLAL RVTGVIIAVL GMIIAVLGMI IAALGATITG LLYFGHWALY KLVILSLGFK  60
   61 IVTPGDVCVS NTLPTHNGET ALHSETTVGS DIEQIELQNM PTPVKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle