YRC Public Data Repository - Protein Structure Prediction

Protein:	alg11
Organism:	Schizosaccharomyces pombe
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alg11.

Description	E-value	Query Range	Subject Range
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	246.0	[0..55]	[463..1]
gi\|54015875, gi\|... - gi\|54024367\|ref\|YP_118609.1\| putative glycosyltransferase [Nocardia farcinica IFM 10152], gi\|5401587...	236.0	[0..55]	[463..1]
gi\|68354930 - gi\|68354930\|ref\|XP_688737.1\| PREDICTED: hypothetical protein XP_683645 [Danio rerio]	235.0	[0..1]	[464..40]
gi\|41398164, gi\|... - gi\|41409344\|ref\|NP_962180.1\| hypothetical protein MAP3246 [Mycobacterium avium subsp. paratuberculos...	233.0	[0..49]	[463..2]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	233.0	[0..54]	[466..3]
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	232.0	[0..55]	[465..1]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	230.0	[0..55]	[471..1]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	228.0	[0..55]	[469..1]
gi\|20806796 - gi\|20806796\|ref\|NP_621967.1\| predicted glycosyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20806796, gi\|... - gi\|20806796\|ref\|NP_621967.1\| glycosyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515259...	227.0	[0..37]	[466..1]

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Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTLAIALF IAVVAIHSHI RRKICKEIGI RLIKKIAPVK ASLYKQVGVE PKLARTVGFF  60
   61 HPYCNAGGGG ERVLWTAVKS VQTEFPNVIS VVYTGDNVSK AEILRRVKNT FEIDLDSSKI 120
  121 VFVYLKLRFL VSATTWHRFT LLGQSLGSMI LGFEAIYRFA PDIFIDTMGY AFTFCVVKSF 180
  181 QNIPVGAYVH YPTISTDMLK SLKQVSLLAK VKMAYWRWFA QLYSDAGSHA DYVMTNSSWT 240
  241 RNHIASLWGK DIQLSVVFPP CNTSELEKID INRKREPTLL YLAQYRPEKN HENVLRSFAL 300
  301 YFEQHPDSPA KLLLVGSVRG EEDMCFVNHL KTLATELNLQ SKVKFVVDAP WPKVVEYLGT 360
  361 CSIGVNYMWN EHFGIGVVEY MAAGLIPVVN NSGGPKFDIV IPWIGKPTGF HASTISEYAE 420
  421 AYHKALTLSP QEQLEMRINA RSACARFGEH VFMRDFGNVF AKLLREDYSR T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	2bisA
Description:	Structure of glycogen synthase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glycosyltransferase activity	6.29844570060934	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	6.29677368620923	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	5.49550363797801	bayes_pls_golite062009
mannosyltransferase activity	4.92120689306219	bayes_pls_golite062009
catalytic activity	2.65148466065976	bayes_pls_golite062009
transferase activity	2.6268567881241	bayes_pls_golite062009
glycolipid mannosyltransferase activity	2.11118804077698	bayes_pls_golite062009
glucosyltransferase activity	1.5162351691061	bayes_pls_golite062009
UDP-glucosyltransferase activity	1.21599854394093	bayes_pls_golite062009
glycogen phosphorylase activity	0.607220464589157	bayes_pls_golite062009
binding	0.399722153246393	bayes_pls_golite062009
acetylglucosaminyltransferase activity	0.354187614795831	bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	0.333194028937286	bayes_pls_golite062009
phosphorylase activity	0.296436712681472	bayes_pls_golite062009
protein binding	0.198267161626932	bayes_pls_golite062009
alpha-1,3-mannosyltransferase activity	0.124958696552942	bayes_pls_golite062009
carbohydrate phosphatase activity	4.32270241054966E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: