YRC Public Data Repository - Protein Structure Prediction

Protein:	tfg3
Organism:	Schizosaccharomyces pombe
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tfg3.

Description	E-value	Query Range	Subject Range
gi\|44981540 - gi\|44981540\|gb\|AAS51325.1\| ACR099Cp [Ashbya gossypii ATCC 10895] gi\|44981540, gi\|... - gi\|45185785\|ref\|NP_983501.1\| ACR099Cp [Ashbya gossypii ATCC 10895], gi\|44981540\|gb\|AAS51325.1\| ACR09...	309.0	[0..1]	[239..2]
gi\|67515603, gi\|... - gi\|67515603\|ref\|XP_657687.1\| hypothetical protein AN0083.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	308.0	[0..1]	[238..1]
gi\|40882136 - gi\|40882136\|emb\|CAF05963.1\| related to transcription initiation factor IIF 30K chain [Neurospora cra...	293.0	[0..4]	[237..3]
TAF14_YEAST - Transcription initiation factor TFIID subunit 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... TAF14 - Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes, involved in RNA polymerase II transcrip... gi\|190407829 - gi\|190407829\|gb\|EDV11094.1\| transcription initiation factor TFIID subunit 14 [Saccharomyces cerevisi...	292.0	[0..1]	[238..2]
gi\|85081360 - gi\|85081360\|ref\|XP_956708.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917782, gi\|... - gi\|32403834\|ref\|XP_322530.1\| hypothetical protein [Neurospora crassa], gi\|28917782\|gb\|EAA27472.1\| hy...	288.0	[0..13]	[237..96]
gi\|50294109, gi\|... - gi\|50294109\|ref\|XP_449466.1\| hypothetical protein CAGL0M02739g [Candida glabrata CBS138], gi\|4952878... gi\|49528780 - gi\|49528780\|emb\|CAG62442.1\| unnamed protein product [Candida glabrata]	280.0	[0..1]	[238..2]
gi\|115387453, gi... - gi\|115387453\|ref\|XP_001211232.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	280.0	[0..1]	[238..1]
gi\|49642499\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50306779, gi\|... - gi\|50306779\|ref\|XP_453365.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642499\|emb\|CAH0046...	278.0	[0..1]	[238..2]
gi\|38106169, gi\|... - gi\|39940072\|ref\|XP_359573.1\| hypothetical protein MG05204.4 [Magnaporthe grisea 70-15], gb\|EAA52512....	275.0	[0..4]	[236..3]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVKRTVRL ITDQNVLPGG EAAVLNDQSF PVREWSIKLV CLNPQGEETD ASFVDRVTYK  60
   61 LHPTFQNPTR TIRKPPFQIK EQGWGEFEME IIIYYADKGG EHRFLHYLHF QQEHYHEDIE 120
  121 LNINATRPGL LKALTATG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.0
Match:	PF03366.3
Description:	No description for PF03366.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVPGYSDEGE EARKDKRKNE SEVGAGKKKA KAKPVDMDKL AEGLQKLQED DLLQVVQMVN  60
   61 ENKTPDMYVR NDIEGGEFHI DLYTLPDNLL LLLYSFCAKR VTM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits