YRC Public Data Repository - Protein Structure Prediction

Protein:	sap145
Organism:	Schizosaccharomyces pombe
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sap145.

Description	E-value	Query Range	Subject Range
gi\|40743089, gi\|... - gi\|67537856\|ref\|XP_662702.1\| hypothetical protein AN5098.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	604.0	[0..43]	[600..2]
gi\|32409653, gi\|... - gi\|32409653\|ref\|XP_325307.1\| hypothetical protein ( related to spliceosome associated protein 145 [i... gi\|85110405 - gi\|85110405\|ref\|XP_963443.1\| spliceosome associated protein 145	597.0	[0..63]	[592..43]
gi\|16416071 - gi\|16416071\|emb\|CAB91455.2\| related to SPLICEOSOME ASSOCIATED PROTEIN 145 [Neurospora crassa] gi\|164424847, gi... - gi\|164424847\|ref\|XP_963443.2\| hypothetical protein NCU05452 [Neurospora crassa OR74A], gi\|157070688\|...	594.0	[0..39]	[592..1]
gi\|71022743, gi\|... - gi\|71022743\|ref\|XP_761601.1\| hypothetical protein UM05454.1 [Ustilago maydis 521], ref\|XP_403069.1\| ...	572.0	[0..45]	[596..31]
gi\|38105121, gi\|... - gi\|39942204\|ref\|XP_360639.1\| hypothetical protein MG03182.4 [Magnaporthe grisea 70-15], gb\|EAA51587....	567.0	[0..39]	[592..1]
gi\|116204735, gi... - gi\|88176379\|gb\|EAQ83847.1\| hypothetical protein CHGG_10251 [Chaetomium globosum CBS 148.51], gi\|1162...	559.0	[0..44]	[592..1]
gi\|114638643 - gi\|114638643\|ref\|XP_001170655.1\| PREDICTED: splicing factor 3B subunit 2 isoform 1 [Pan troglodytes]	558.0	[0..87]	[598..343]
gi\|187034025, gi... - gi\|39592755\|emb\|CAE62369.1\| Hypothetical protein CBG06453 [Caenorhabditis briggsae], gi\|187034025\|em...	552.0	[0..35]	[593..10]
gi\|31873734 - gi\|31873734\|emb\|CAD97834.1\| hypothetical protein [Homo sapiens]	549.0	[0..87]	[598..247]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLLTRPKHC CLDFLLMAEI QTAQNPLKEL EKILERNNKQ KNKKSRNQVR REKKKLLREK  60
   61 TNSGAKLAEK NSDDKDQLTE NNDNLYNDKK SNGNFYDTNK TDSVDGMVYT TIVDSVELDP 120
  121 NDPLIEQFKD VFNRFKADGQ EKDFEDTDKG QIMYSDDEIL SEGEEDALQK QQEEKLSKKK 180
  181 LRKLKRM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVAQLKMLSE KADVVEWWDV SSLDPLFLTH LKAYPNTVPV PRHWNQKRDY LSGQRGIERQ  60
   61 LFELPSYIRA TGIVQMRNAV HENEADMPLR QKMRERVQPK MGKLDIDYQK LHDAFFRYQT 120
  121 KPVLTGFGEC YFEGKELEAD VKEKRPGDIS EELREALGIA PGAPPPWLFA MQRYGPPPSY 180
  181 PDLKIPGVNC PIPTGAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.091515
Match:	PF04037.2
Description:	No description for PF04037.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [385-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WGFHPGGWGK PPVDQFNRPL YGDVFGNVKP RIHAGTGSPV STQHWGELEE FEEEESSEEE  60
   61 ESEDVEYPTE EITERETIEE YQSASEPRSQ REDLHAEPLT YFNQSNVEVD NVELRKNTQP 120
  121 SSDAANRDLY QVLPEKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [522-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNISGFMGPQ HQYDIPTAED TLPQKRNAHS MLSSTNKGDV ALNQSSNWQD ELSELVSEQA  60
   61 MKVGAAKRQK TQSKRDKFRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits