YRC Public Data Repository - Protein Structure Prediction

Protein:	nse2
Organism:	Schizosaccharomyces pombe
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nse2.

Description	E-value	Query Range	Subject Range
nse2 - Smc5-6 complex non-SMC subunit 2	208.0	[0..1]	[267..1]
gi\|44982753, gi\|... - gi\|45187969\|ref\|NP_984192.1\| ADR096Cp [Ashbya gossypii ATCC 10895], gi\|44982753\|gb\|AAS52016.1\| ADR09... gi\|44982753 - gi\|44982753\|gb\|AAS52016.1\| ADR096Cp [Ashbya gossypii ATCC 10895]	202.0	[0..31]	[264..723]
gi\|21622382 - gi\|21622382\|emb\|CAD37036.1\| related to ubiquitin fusion degradation protein 2 [Neurospora crassa]	186.0	[0..28]	[261..824]
gi\|49094236, gi\|... - gi\|67528488\|ref\|XP_662046.1\| hypothetical protein AN4442.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	185.0	[0..33]	[265..810]
gi\|32404004, gi\|... - gi\|32404004\|ref\|XP_322615.1\| hypothetical protein [Neurospora crassa], gi\|28917531\|gb\|EAA27230.1\| co... gi\|85080009 - gi\|85080009\|ref\|XP_956466.1\| hypothetical protein NCU03357 [Neurospora crassa OR74A]	185.0	[0..28]	[261..785]
gi\|115398121, gi... - gi\|115398121\|ref\|XP_001214652.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	179.0	[0..33]	[260..777]
UFD2 - Ubiquitin chain assembly factor (E4) that cooperates with a ubiquitin-activating enzyme (E1), a ubiq... UFD2_YEAST - E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE...	179.0	[0..36]	[265..717]
gi\|46109372, gi\|... - gi\|46109372\|ref\|XP_381744.1\| hypothetical protein FG01568.1 [Gibberella zeae PH-1], gi\|42545680\|gb\|E...	178.0	[0..28]	[260..1358]
gi\|83769203 - gi\|83769203\|dbj\|BAE59340.1\| unnamed protein product [Aspergillus oryzae] gi\|169773747 - gi\|169773747\|ref\|XP_001821342.1\| hypothetical protein [Aspergillus oryzae RIB40]	173.0	[0..33]	[260..722]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAQLKTSL EALSQNLLPG NQNHCSFDFQ LKEIDDSIKQ VIKCALVAAE IKNNECLDML  60
   61 DSGIRELLDA KQRLLLMQQS VDTLANKTSE NISDFEVRTT EMTFLLFLLY VDENKSLLDI 120
  121 YTQIFKELIQ EYEEKSDYGK YGTQGEYIEF KKTIWHEQNT DGSDFPSMKT FFNVMNTEEQ 180
  181 EADEVMVYSA TFDNRCPLTL QPIVHPILST ACNHFYEKDA ILSLLNPTCV CPVVGCEARL 240
  241 QRSLLKEDEI LERRLRRAQE ISNLKEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	2qizA
Description:	No description for 2qizA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits