YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1442.12
Organism:	Schizosaccharomyces pombe
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1442.12.

Description	E-value	Query Range	Subject Range
gi\|44984027 - gi\|44984027\|gb\|AAS53037.1\| AER357Cp [Ashbya gossypii ATCC 10895] gi\|44984027, gi\|... - gi\|45190959\|ref\|NP_985213.1\| AER357Cp [Ashbya gossypii ATCC 10895], gi\|44984027\|gb\|AAS53037.1\| AER35...	158.0	[0..2]	[239..41]
gi\|145009887, gi... - gi\|39942940\|ref\|XP_361007.1\| hypothetical protein MGG_03550 [Magnaporthe grisea 70-15], gb\|EAA51955....	157.0	[0..4]	[239..2]
gi\|88184698, gi\|... - gi\|88184698\|gb\|EAQ92166.1\| hypothetical protein CHGG_00401 [Chaetomium globosum CBS 148.51], gi\|1161...	157.0	[0..6]	[239..9]
gi\|28921256, gi\|... - gi\|32421427\|ref\|XP_331157.1\| hypothetical protein [Neurospora crassa], gi\|28921256\|gb\|EAA30566.1\| hy... gi\|85093979 - gi\|85093979\|ref\|XP_959802.1\| hypothetical protein [Neurospora crassa OR74A]	157.0	[0..17]	[239..2]
gi\|49524615, gi\|... - gi\|50285765\|ref\|XP_445311.1\| unnamed protein product [Candida glabrata], gi\|49524615\|emb\|CAG58217.1\|... gi\|49524615 - gi\|49524615\|emb\|CAG58217.1\| unnamed protein product [Candida glabrata]	153.0	[0..4]	[239..45]
gi\|46435324, gi\|... - gi\|68484558\|ref\|XP_713810.1\| hypothetical protein CaO19.677 [Candida albicans SC5314], gi\|68484479\|r... gi\|238878475 - gi\|238878475\|gb\|EEQ42113.1\| CDP-diacylglycerol-serine O-phosphatidyltransferase [Candida albicans WO... orf19.677, orf19... - CHO1 CGDID:CAL0001102 Assembly 19, Contig19-10064 (51734, 52555) CDS, translated using codon table 1...	148.0	[0..16]	[239..51]
PSS_YEAST - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508... CHO1 - Phosphatidylserine synthase, functions in phospholipid biosynthesis; catalyzes the reaction CDP-diac...	148.0	[0..4]	[239..42]
gi\|111059309 - gi\|111059309\|gb\|EAT80429.1\| hypothetical protein SNOG_12017 [Phaeosphaeria nodorum SN15]	147.0	[0..4]	[239..2]
gi\|40743564, gi\|... - gi\|67538982\|ref\|XP_663265.1\| hypothetical protein AN5661.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	146.0	[0..22]	[239..195]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSRVSPGL KLQSDASNQS NDKENKLLAY VNDNRHFSLI RALHLADLIT LMNGFCGVMS  60
   61 IFSSLRYCLS G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQSAFHLWNA MYFMPFALFF DFLDGKVARW RGKSSLMGQE LDSLADLISF GVSPAVFAFC  60
   61 CGFQTFLDTV ILSLFVLCGL TRLARFNVSV NSIPKDGSGK SQFFEGTPIP TTLSLVTVCG 120
  121 VCILKGKTHE NLPWGEWCGN TPFAFHPLVV LFVLSGIAMT SKKLKVPKST FLLHSLKYV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.568636
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits