YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1071.09c
Organism:	Schizosaccharomyces pombe
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1071.09c.

Description	E-value	Query Range	Subject Range
gi\|50762236 - gi\|50762236\|ref\|XP_424983.1\| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock pro...	177.0	[0..27]	[220..215]
gi\|85096830 - gi\|85096830\|ref\|XP_960329.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32413741, gi\|... - gi\|32413741\|ref\|XP_327350.1\| hypothetical protein [Neurospora crassa], gi\|28921817\|gb\|EAA31093.1\| hy...	169.0	[0..31]	[281..645]
gi\|114624285 - gi\|114624285\|ref\|XP_001164685.1\| PREDICTED: DnaJ (Hsp40) homolog, subfamily B, member 5 isoform 5 [P...	167.0	[0..27]	[220..113]
gi\|73971208 - gi\|73971208\|ref\|XP_866030.1\| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock pro...	165.0	[0..27]	[220..72]
gi\|109476310, gi... - ref\|XP_233767.2\| similar to heat shock protein hsp40-3 [Rattus norvegicus], gi\|109476310\|ref\|XP_0010...	164.0	[0..27]	[220..72]
gi\|123997425, gi... - gi\|123997425\|gb\|ABM86314.1\| DnaJ (Hsp40) homolog, subfamily B, member 5 [synthetic construct], gi\|12... gi\|15082401 - gi\|15082401\|gb\|AAH12115.1\| DNAJB5 protein [Homo sapiens]	163.0	[0..28]	[220..1]
gi\|47206629 - gi\|47206629\|emb\|CAF95110.1\| unnamed protein product [Tetraodon nigroviridis]	162.0	[0..28]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLLNLCYI KDECQFSLLP LTYSFIKMDI DPYSVLGVEK DASDELIRRA YRKKALQHHP  60
   61 DRIHDEEKKV EARIEFDKVA IAYGVLSDKK RRKHYDKTGQ LRETDADIDF DWKEWLDELY 120
  121 QGVVSGETLN EFKASYQYSE EEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2ctwA
Description:	Solution structure of J-domain from mouse DnaJ subfamily C menber 5
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [144-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDVLKAYEKG KGSMDVILEE VMCCEISDED RFRQVINNAI KDGKISKYKR FAPNEKKRKR  60
   61 RAKAAEREAQ EAEELSMELG LDENLKKRRK AGASDEEALS ALIRSRQKSR MYNLISNLES 120
  121 KYSKSSTKPK KSKKSRSKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits