| Protein: | rex3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 540 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rex3.
| Description | E-value | Query Range |
Subject Range |
|
|
290.0 | [0..110] | [535..29] |
|
|
290.0 | [0..71] | [535..109] |
|
|
283.0 | [0..76] | [535..4] |
|
|
264.0 | [0..76] | [535..1132] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MFSPLGQFKH IVCPFLRTGR KCQSRNCFFS HDFQNSTKIS PPYSENVEGY PKVKIEKSLP 60
61 YKYDNCKLSI CVPIVTTCIP YHSVENLNFN IRQNISTTLN LEKTNDSIKE TKNENFRMDV 120
121 LETYKCKQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.366 | a.74.1 | Cyclin-like |
| View | Download | 0.455 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.480 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.404 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.361 | d.58.47 | Hypothetical protein VC0424 |
|
Region A: Residues: [129-362] |
1 11 21 31 41 51
| | | | | |
1 LNHQTTHLPT NTVLKKRSLF NDAISIVPNK KKQLVSAIST NSDSQGASSN IIPTPKYDSN 60
61 SPAGHELRKR MTHLLYESYK DLGYSNAESS MLALLDEKNI CETANSKMIY SSSCKSKILS 120
121 LKKAPKKNEI QGSTPDEKLE SLVHSEEELI LWGYNIGDVA PVNPPDELRE CDRCGTRFAD 180
181 PRGPCTYHWG KLFREKQGGE KIRTYTCCGV KEGDSSGCII EDNHVFKYRH LPYL
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1pqvS |
| Description: | RNA polymerase II-TFIIS complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [363-540] |
1 11 21 31 41 51
| | | | | |
1 ASVHPFSYLP DSTNSKQLSH CALDCELCYT TNGMELARLT VVAKESIIMD VFIKPKGKIL 60
61 SLNTRFSGIH DAKELESGIT MDQMYIKIKE LGMNKNTILI GHGLENDLNA MRLIHKRVID 120
121 TALLFTHARG PPFRYSLKYL TKKYLGTTIQ TSTHDSEEDA VSALQLVFYK TKSNESQN
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 2p1jA |
| Description: | No description for 2p1jA was found. |
